liulifenyf / TSPTFBSView external linksLinks
trans-species prediction of TFBS in plants
☆14Apr 26, 2021Updated 4 years ago
Alternatives and similar repositories for TSPTFBS
Users that are interested in TSPTFBS are comparing it to the libraries listed below
Sorting:
- PanEffect is a JavaScript framework to explore variant effects across a pangenome. The tool has two views that allows a user to (1) expl…☆13Jan 30, 2024Updated 2 years ago
- Methylatino phasing using PacBio CCS reads☆14Dec 13, 2024Updated last year
- ☆11Dec 15, 2025Updated last month
- Pipeline of time-ordered gene coexpression network (TO-GCN) construction from three-dimensional (gene expression, condition, and time) da…☆53Jul 13, 2023Updated 2 years ago
- Annotation Pipeline for NLR genes☆16Dec 6, 2018Updated 7 years ago
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆31Jan 3, 2022Updated 4 years ago
- A tutorial for learning de novo assembly☆33Dec 8, 2011Updated 14 years ago
- This is a series of scripts on the rapid construction of target interval consensus sequences from bam files and the rapid construction of…☆17Jan 12, 2024Updated 2 years ago
- ☆18Oct 21, 2024Updated last year
- Evaluating genomic sequence models for explaining personalized expression variation☆19Dec 6, 2023Updated 2 years ago
- Telomere local assembly, Improved whole genome polish, and Plastid assembly☆22Apr 25, 2025Updated 9 months ago
- An efficient assembly tool for plant mitochondrial genome☆69May 31, 2024Updated last year
- ☆21Aug 8, 2024Updated last year
- quickly filter fastq files by matching sequences to a set of regex patterns☆58Dec 14, 2025Updated 2 months ago
- ☆27Aug 29, 2025Updated 5 months ago
- A Similarity-Guided Alignment Algorithm☆28Feb 7, 2026Updated last week
- use variant nesting information to flter overlapping sites from vg deconstruct output☆31Jun 12, 2025Updated 8 months ago
- Predicting gene expression levels from genomic sequences☆54Jun 24, 2020Updated 5 years ago
- ☆26Jul 28, 2025Updated 6 months ago
- Split-read pipeline for the identification of non-reference TE insertions with TSDs☆25Sep 14, 2020Updated 5 years ago
- HiC-Hiker: A probabilistic model to determine contig orientation in chromosome-length scaffolds with Hi-C☆26Jan 14, 2021Updated 5 years ago
- Learning motif contributions to cell transitions using sequence features and graphs.☆28Aug 30, 2024Updated last year
- FastRemap, a C++ tool for quickly remapping reads between genome assemblies based on the commonly used CrossMap tool. Link to paper: http…☆26Aug 24, 2022Updated 3 years ago
- NLR-Annotator upload☆76Jul 19, 2023Updated 2 years ago
- Toolkit for evolutionary analyses of linkage groups☆33Jul 17, 2024Updated last year
- Easily construct the ML species tree with single-copy gene shared by different species.☆27Oct 26, 2018Updated 7 years ago
- MYB transcription factors are one of the largest gene family in plants and control many processes. This repository provides additional ba…☆12Jul 11, 2025Updated 7 months ago
- An easy way to run BioNano genomic analysis☆28Apr 9, 2021Updated 4 years ago
- Taxon-aware analysis of clustered protein sequences☆31Jul 1, 2024Updated last year
- High-precision TE Annotator☆150Dec 4, 2025Updated 2 months ago
- A tool to infer species tree and phylogenetic network from multilocus data☆32Jul 2, 2020Updated 5 years ago
- An attempt to help anyone interested in using Perl for Bioinformatics☆35Dec 4, 2019Updated 6 years ago
- NeuronMotif: deciphering cis-regulatory codes by layerwise demixing of deep neural networks☆11Dec 3, 2023Updated 2 years ago
- ☆33Aug 2, 2022Updated 3 years ago
- A GAN-based method for Enhancing Hi-C data☆32Dec 17, 2020Updated 5 years ago
- ☆36Sep 25, 2022Updated 3 years ago
- Bioconda is a distribution of bioinformatics software realized as a channel for the versatile package manager Conda.☆40Updated this week
- Detecting DNA methylation from PacBio CCS reads☆84Apr 8, 2025Updated 10 months ago
- ☆33Mar 19, 2025Updated 10 months ago