Alternatives and similar repositories for HiCcompareWorkshop

Users that are interested in HiCcompareWorkshop are comparing it to the libraries listed below

• zhongw2 / GeneTEFlow
  ☆23Updated 4 years ago
• nerettilab / RepEnrich2
  RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.
  ☆41Updated 3 years ago
• yezhengSTAT / CUTTag_tutorial
  Tutorial Website
  ☆60Updated 4 years ago
• williamritchie / IRFinder
  Detecting intron retention from RNA-Seq experiments
  ☆55Updated last year
• ManchesterBioinference / IntegratingATAC-RNA-HiC
  scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper
  ☆25Updated 2 years ago
• xuzhougeng / RNA-seq-downstream-analysis
  Arabidopsis RNA_-seq downstream analysis shiny app
  ☆30Updated 6 years ago
• Xinglab / rMATS-long
  ☆34Updated 10 months ago
• shunliubio / easym6A
  Process m6A/MeRIP-seq data in a single or batch job mode
  ☆20Updated 5 years ago
• snystrom / memes
  An R interface to the MEME Suite
  ☆53Updated 4 months ago
• BioinfoUNIBA / QEdit
  RNA editing quantification in deep transcriptome data
  ☆15Updated 3 months ago
• a-velt / Mfuzz_RNAseq
  A R script to perform clustering of gene expression time-series RNA-seq data with Mfuzz.
  ☆22Updated 6 years ago
• ay-lab / FitHiChIP
  Statistically Significant loops from HiChIP data
  ☆46Updated last year
• twlab / TEProf2Paper
  TEProf2 Pipeline used to find promoters and predict protein sequences from RNA-sequencing data
  ☆27Updated 2 years ago
• zhejilab / RibORF
  Identifying genome-wide translated open reading frames using ribosome profiling
  ☆23Updated 2 years ago
• Xinglab / CLAM
  CLIP-seq Analysis of Multi-mapped reads
  ☆31Updated 4 years ago
• NBISweden / workshop-mlbiostatistics
  Geared towards life scientists wanting to be able to understand and use basic statistical and machine learning methods
  ☆16Updated 4 months ago
• stephenturner / mergelanes
  Merge fastq files split over lanes
  ☆20Updated 7 years ago
• djhn75 / RNAEditor
  ☆15Updated 3 years ago
• ashleymaeconard / TIMEOR
  TIMEOR: Trajectory Inference and Mechanism Exploration with Omics Data in R
  ☆17Updated 3 years ago
• deWitLab / GENOVA
  GENome Organisation Visual Analytics
  ☆15Updated 3 years ago
• s-andrews / sradownloader
  A script to make downloading of SRA/GEO data easier
  ☆31Updated 2 years ago
• stjude / ChIPseqSpikeInFree
  A Spike-in Free ChIP-Seq Normalization Approach for Detecting Global Changes in Histone Modifications
  ☆34Updated 3 years ago
• dekkerlab / cworld-dekker
  perl cworld module and collection of utility/analysis scripts for C data (3C, 4C, 5C, Hi-C)
  ☆67Updated 6 years ago
• Xinglab / lr2rmats
  Long read to rMATS
  ☆32Updated 2 years ago
• maxsonBraunLab / gopeaks
  Peak caller for CUT&TAG data
  ☆29Updated 3 years ago
• Xinglab / SEASTAR
  SEASTAR - Systematic Evaluation of Alternative transcription STArt site in RNA
  ☆14Updated 7 years ago
• databio / pepatac
  A modular, containerized pipeline for ATAC-seq data processing
  ☆60Updated last month
• crazyhottommy / pyflow-scATACseq
  snakemake workflow for post-processing scATACseq data
  ☆22Updated 5 years ago
• YaoLab-Bioinfo / shinyChromosome
  an R/Shiny application for interactive creation of non-circular plots of whole genomes
  ☆45Updated 5 months ago
• markowetzlab / Drews2022_CIN_Compendium
  Main repository for Drews et al. (Nature, 2022)
  ☆42Updated 2 years ago