Alternatives and similar repositories for HiCcompareWorkshop

Users that are interested in HiCcompareWorkshop are comparing it to the libraries listed below

• ManchesterBioinference / IntegratingATAC-RNA-HiC
  scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper
  ☆24Updated 2 years ago
• zhongw2 / GeneTEFlow
  ☆23Updated 4 years ago
• crazyhottommy / pyflow-scATACseq
  snakemake workflow for post-processing scATACseq data
  ☆22Updated 5 years ago
• williamritchie / IRFinder
  Detecting intron retention from RNA-Seq experiments
  ☆55Updated last year
• yezhengSTAT / CUTTag_tutorial
  Tutorial Website
  ☆59Updated 4 years ago
• NBISweden / workshop-RNAseq
  Workshop • Analysis of RNA-seq data
  ☆36Updated last year
• ay-lab / ATACProc
  ATAC-seq processing pipeline
  ☆33Updated 3 years ago
• nerettilab / RepEnrich2
  RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.
  ☆39Updated 3 years ago
• markowetzlab / Drews2022_CIN_Compendium
  Main repository for Drews et al. (Nature, 2022)
  ☆42Updated last year
• snystrom / memes
  An R interface to the MEME Suite
  ☆52Updated last month
• dekkerlab / cworld-dekker
  perl cworld module and collection of utility/analysis scripts for C data (3C, 4C, 5C, Hi-C)
  ☆67Updated 6 years ago
• ay-lab / FitHiChIP
  Statistically Significant loops from HiChIP data
  ☆44Updated last year
• a-velt / Mfuzz_RNAseq
  A R script to perform clustering of gene expression time-series RNA-seq data with Mfuzz.
  ☆22Updated 6 years ago
• TheJacksonLaboratory / BRCA-LRseq-pipeline
  Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.
  ☆16Updated 3 years ago
• stephenturner / mergelanes
  Merge fastq files split over lanes
  ☆20Updated 7 years ago
• Xinglab / CLAM
  CLIP-seq Analysis of Multi-mapped reads
  ☆31Updated 4 years ago
• shunliubio / easym6A
  Process m6A/MeRIP-seq data in a single or batch job mode
  ☆20Updated 5 years ago
• shizhuoxing / scISA-Tools
  single-cell-Isoform-Sequencing-Analysis-Tools: New and powerful tools brings single-cell RNA sequencing to the Isoform level and single m…
  ☆25Updated last year
• stjude / ChIPseqSpikeInFree
  A Spike-in Free ChIP-Seq Normalization Approach for Detecting Global Changes in Histone Modifications
  ☆33Updated 3 years ago
• maxsonBraunLab / cutTag-pipeline
  Pipeline for Cut&Tag analysis
  ☆23Updated 3 months ago
• OlgaVT / Alternative-Splicing-Tools
  A list of alternative splicing analysis resources
  ☆45Updated 4 months ago
• ashleymaeconard / TIMEOR
  TIMEOR: Trajectory Inference and Mechanism Exploration with Omics Data in R
  ☆17Updated 3 years ago
• simonvh / bioinfosummer
  Tutorial for AMSI BioInfoSummer 2018
  ☆29Updated 6 years ago
• jsschrepping / r_docker
  Docker container for genomics analyses in R.
  ☆25Updated last year
• davetang / defining_genomic_regions
  Define regions in the genome
  ☆32Updated 3 years ago
• twlab / TEProf2Paper
  TEProf2 Pipeline used to find promoters and predict protein sequences from RNA-sequencing data
  ☆27Updated 2 years ago
• BioinfoUNIBA / QEdit
  RNA editing quantification in deep transcriptome data
  ☆15Updated 3 weeks ago
• RitataLU / ATACgraph
  ☆15Updated 2 years ago
• NBISweden / workshop-epigenomics-RTDs
  workshop website on readthedocs
  ☆19Updated last month
• Xinglab / rMATS-long
  ☆30Updated 8 months ago