mdozmorov / HiCcompareWorkshopLinks
Differential Hi-C Data Analysis Workshop https://currentprotocols.onlinelibrary.wiley.com/doi/abs/10.1002/cpbi.76
☆15Updated 4 years ago
Alternatives and similar repositories for HiCcompareWorkshop
Users that are interested in HiCcompareWorkshop are comparing it to the libraries listed below
Sorting:
- An R interface to the MEME Suite☆52Updated 3 months ago
- scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper☆24Updated 2 years ago
- snakemake workflow for post-processing scATACseq data☆22Updated 5 years ago
- Tutorial Website☆59Updated 4 years ago
- Detecting intron retention from RNA-Seq experiments☆55Updated last year
- ATAC-seq processing pipeline☆34Updated 3 years ago
- Main repository for Drews et al. (Nature, 2022)☆42Updated 2 years ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆40Updated 3 years ago
- EasyFuse is a pipeline for accurate fusion gene detection from RNA-seq data.☆62Updated 9 months ago
- Motif manipulation functions for R.☆30Updated this week
- RNA editing quantification in deep transcriptome data☆15Updated 2 months ago
- ☆23Updated 4 years ago
- RNA-seq workflow: differential transcript usage☆22Updated 2 years ago
- ☆32Updated 9 months ago
- an R/Shiny application for interactive creation of non-circular plots of whole genomes☆45Updated 4 months ago
- CLIP-seq Analysis of Multi-mapped reads☆31Updated 4 years ago
- Statistically Significant loops from HiChIP data☆44Updated last year
- Code and analysis pipeline for Smart-seq3 (Hagemann-Jensen et al. 2020).☆54Updated 3 years ago
- A Spike-in Free ChIP-Seq Normalization Approach for Detecting Global Changes in Histone Modifications☆33Updated 3 years ago
- A script to make downloading of SRA/GEO data easier☆31Updated last year
- ☆15Updated 3 years ago
- Merge fastq files split over lanes☆20Updated 7 years ago
- A R script to perform clustering of gene expression time-series RNA-seq data with Mfuzz.☆22Updated 6 years ago
- workshop website on readthedocs☆20Updated this week
- Interactive R package to quantify, analyse and visualise alternative splicing☆37Updated this week
- Define regions in the genome☆33Updated 3 years ago
- deepStats: a stastitical toolbox for deeptools and genomic signals☆34Updated 4 years ago
- A toolkit for working with ATAC-seq data.☆24Updated last year
- Process m6A/MeRIP-seq data in a single or batch job mode☆20Updated 5 years ago
- A list of alternative splicing analysis resources☆46Updated 6 months ago