kundajelab / ChromDragoNNLinks
Code for the paper "Integrating regulatory DNA sequence and gene expression to predict genome-wide chromatin accessibility across cellular contexts"
☆44Updated 4 years ago
Alternatives and similar repositories for ChromDragoNN
Users that are interested in ChromDragoNN are comparing it to the libraries listed below
Sorting:
- ☆51Updated 2 years ago
- Coda: a convolutional denoising algorithm for genome-wide ChIP-seq data☆33Updated 8 years ago
- ☆32Updated 6 years ago
- Downloader for ENCODE☆32Updated 5 years ago
- A portable, flexible, parallelized tool for complete processing of massively parallel reporter assay data☆35Updated 11 months ago
- ☆24Updated last year
- Deep learning model built to quantitatively predict the activities of developmental and housekeeping enhancers from DNA sequence in Droso…☆71Updated 2 years ago
- Deep-learning Augmented RNA-seq analysis of Transcript Splicing☆115Updated last year
- Predicting gene expression levels from genomic sequences☆55Updated 5 years ago
- Annotation of genomic regions using transcription factor binding sites and epigenetic data☆41Updated 3 years ago
- A neural network framework for predicting the Hi-C chromatin interactions from megabase scale DNA sequence☆33Updated last year
- Signed LD profile regression code☆19Updated 4 months ago
- Deep neural networks for predicting CpG methylation☆37Updated 8 years ago
- APA Regression Net - Predict and Engineer Alternative Polyadenylation☆40Updated 4 years ago
- ☆49Updated 3 years ago
- Code for reproducing the Sei manuscript results☆17Updated 3 years ago
- Tissue-specific variant effect predictions on splicing☆42Updated 2 years ago
- ☆18Updated 3 years ago
- PECA is a software for inferring context specific gene regulatory network from paired gene expression and chromatin accessibility data☆45Updated 2 months ago
- code to run sei and obtain sei and sequence class predictions☆109Updated 3 years ago
- Epimap processing and analysis code repository☆33Updated 3 years ago
- Regression-based annotation of protein-coding sequences from ribosome profiling data☆32Updated 5 years ago
- 🏺 Exploring novel tumor epitope identification☆37Updated 5 years ago
- A repository for the design and analysis of pooled single cell RNA-seq perturbation experiments.☆97Updated 6 years ago
- Tutorials and code for ISMB 2019 short course on Recent Advances in Statistical Methods and Computational Algorithms for Single-Cell Omic…☆41Updated 6 years ago
- ☆41Updated 5 years ago
- epigenome analysis to rank transcription factors☆31Updated 2 years ago
- https://www.biorxiv.org/content/10.1101/2023.07.03.547592v2☆32Updated 11 months ago
- Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles☆30Updated 5 years ago
- ⚙️ Matching T-cell repertoire against a database of TCR antigen specificities☆39Updated 7 years ago