kundajelab / ChromDragoNNLinks
Code for the paper "Integrating regulatory DNA sequence and gene expression to predict genome-wide chromatin accessibility across cellular contexts"
☆44Updated 4 years ago
Alternatives and similar repositories for ChromDragoNN
Users that are interested in ChromDragoNN are comparing it to the libraries listed below
Sorting:
- Predicting gene expression levels from genomic sequences☆54Updated 5 years ago
- ☆51Updated last year
- Deep neural networks for predicting CpG methylation☆37Updated 8 years ago
- A portable, flexible, parallelized tool for complete processing of massively parallel reporter assay data☆32Updated 7 months ago
- Downloader for ENCODE☆32Updated 4 years ago
- Signed LD profile regression code☆18Updated 3 weeks ago
- Code for reproducing the Sei manuscript results☆17Updated 3 years ago
- Coda: a convolutional denoising algorithm for genome-wide ChIP-seq data☆33Updated 8 years ago
- Tissue-specific variant effect predictions on splicing☆42Updated 2 years ago
- Deep-learning Augmented RNA-seq analysis of Transcript Splicing☆114Updated last year
- PECA is a software for inferring context specific gene regulatory network from paired gene expression and chromatin accessibility data☆44Updated last year
- Saluki, a method to predict mRNA half-lives from sequence☆25Updated 2 years ago
- ☆31Updated 5 years ago
- Annotation of genomic regions using transcription factor binding sites and epigenetic data☆40Updated 3 years ago
- A neural network framework for predicting the Hi-C chromatin interactions from megabase scale DNA sequence☆33Updated last year
- Deep learning model built to quantitatively predict the activities of developmental and housekeeping enhancers from DNA sequence in Droso…☆66Updated 2 years ago
- APA Regression Net - Predict and Engineer Alternative Polyadenylation☆39Updated 3 years ago
- ☆48Updated 3 years ago
- Fast motif matching in R☆46Updated last year
- Deep Learning Method to Identify Cancer Associated TCRs☆47Updated 3 years ago
- Deep Feature Interaction Maps (DFIM)☆54Updated 6 years ago
- High-definition modeling of chromatin + transcriptomics data☆24Updated 4 months ago
- Tutorials and code for ISMB 2019 short course on Recent Advances in Statistical Methods and Computational Algorithms for Single-Cell Omic…☆41Updated 6 years ago
- ☆65Updated 2 years ago
- ☆84Updated 4 years ago
- Epimap processing and analysis code repository☆33Updated 3 years ago
- ☆24Updated last year
- Clustering motif models to remove redundancy☆42Updated 2 years ago
- ☆18Updated 2 years ago
- Machine learning tutorial for biologists, designed for Oz Single Cells 2019☆15Updated 6 years ago