kipoi / kipoiseq
Standard set of data-loaders for training and making predictions for DNA sequence-based models.
☆81Updated 6 months ago
Alternatives and similar repositories for kipoiseq:
Users that are interested in kipoiseq are comparing it to the libraries listed below
- A python library for creating simulated regulatory DNA sequences☆38Updated 2 years ago
- Code for the paper "Integrating regulatory DNA sequence and gene expression to predict genome-wide chromatin accessibility across cellula…☆44Updated 3 years ago
- "Representation Learning of Genomic Sequence Motifs with Convolutional Neural Networks" by Peter K. Koo and Sean R. Eddy☆32Updated 5 years ago
- Multi-omics Autoencoder Integration: Deep learning-based heterogenous data analysis toolkit☆49Updated last year
- Tissue-specific variant effect predictions on splicing☆40Updated last year
- Downloader for ENCODE☆31Updated 4 years ago
- Predicting gene expression levels from genomic sequences☆51Updated 4 years ago
- A lite implementation of tfmodisco, a motif discovery algorithm for genomics experiments.☆67Updated this week
- ☆27Updated last year
- Modeling of human 5′ UTRs enables the design of new sequences for target levels of translation and 5′ UTR variant prediction.☆44Updated 5 years ago
- Code for the CRISPOR article, all data and code to create figures and analysis☆40Updated 8 years ago
- TF MOtif Discovery from Importance SCOres☆134Updated last year
- code to run sei and obtain sei and sequence class predictions☆97Updated 2 years ago
- ☆33Updated 2 years ago
- Elucidating the Utility of Genomic Elements with Neural Nets☆66Updated 3 months ago
- Computational Optimization of DNA Activity (CODA)☆55Updated last month
- Concise: Keras extension for regulatory genomics☆35Updated 2 years ago
- A deep learning package for predicting TF binding☆42Updated 5 years ago
- ☆27Updated this week
- "DeepDiff: Deep-learning for predicting Differential gene expression from histone modifications", Bioinformatics, Volume 34, Issue 17,☆20Updated 5 years ago
- Infer selection pressures on features of amino acid CDR3 sequences.☆24Updated 10 months ago
- This repository hosts a minimal version of a Python API for BPNet.☆36Updated 3 weeks ago
- Model zoo for genomics☆166Updated 7 months ago
- Simple and efficient access to genomic data for deep learning models.☆43Updated 5 years ago
- Code and data used in The Great Repertoire Project☆30Updated 3 years ago
- IGoR is a C++ software designed to infer V(D)J recombination related processes from sequencing data. Find full documentation at:☆51Updated 2 years ago
- MHC Class I and Class II neoantigen binding prediction☆28Updated last year
- Pytorch implementation of the Borzoi model from Calico, and Flashzoi, a 3x faster Borzoi enhancement.☆40Updated last month
- C.Origami, a prediction and screening framework for cell type-specific 3D chromatin structure.☆71Updated 7 months ago
- Toolset for training quantitative sequence to function models.☆22Updated 11 months ago