kipoi / kipoiseqLinks
Standard set of data-loaders for training and making predictions for DNA sequence-based models.
☆82Updated last year
Alternatives and similar repositories for kipoiseq
Users that are interested in kipoiseq are comparing it to the libraries listed below
Sorting:
- Code for the paper "Integrating regulatory DNA sequence and gene expression to predict genome-wide chromatin accessibility across cellula…☆44Updated 4 years ago
- Predicting gene expression levels from genomic sequences☆55Updated 5 years ago
- Modeling of human 5′ UTRs enables the design of new sequences for target levels of translation and 5′ UTR variant prediction.☆53Updated 6 years ago
- A python library for creating simulated regulatory DNA sequences☆39Updated 2 years ago
- ☆18Updated last year
- ☆33Updated 2 years ago
- Tissue-specific variant effect predictions on splicing☆42Updated 2 years ago
- Python interface to running command-line and web-based MHC binding predictors☆99Updated last year
- MHC Class I and Class II neoantigen binding prediction☆32Updated 3 months ago
- Downloader for ENCODE☆32Updated 5 years ago
- Elucidating the Utility of Genomic Elements with Neural Nets☆70Updated 11 months ago
- accurate prediction of promoter activity and variant effects from massive parallel reporter assays☆42Updated 4 months ago
- A lite implementation of tfmodisco, a motif discovery algorithm for genomics experiments.☆85Updated last month
- APA Regression Net - Predict and Engineer Alternative Polyadenylation☆39Updated 4 years ago
- ExplaiNN: interpretable and transparent neural networks for genomics☆49Updated 7 months ago
- Saluki, a method to predict mRNA half-lives from sequence☆27Updated 3 years ago
- DeepSEA in TensorFlow☆30Updated 8 years ago
- Deep learning model built to quantitatively predict the activities of developmental and housekeeping enhancers from DNA sequence in Droso…☆71Updated 2 years ago
- Code for the CRISPOR article, all data and code to create figures and analysis☆45Updated 9 years ago
- https://www.biorxiv.org/content/10.1101/2023.07.03.547592v2☆30Updated 9 months ago
- MAVE-NN: genotype-phenotype maps from multiplex assays of variant effect☆28Updated 2 months ago
- A deep learning package for predicting TF binding☆42Updated 5 years ago
- Deep neural networks for predicting CpG methylation☆37Updated 8 years ago
- Multi-omics Autoencoder Integration: Deep learning-based heterogenous data analysis toolkit☆49Updated 2 years ago
- TF MOtif Discovery from Importance SCOres☆156Updated last week
- Knowledge-primed neural networks☆38Updated 2 years ago
- code to run sei and obtain sei and sequence class predictions☆109Updated 2 years ago
- A neural network framework for predicting the Hi-C chromatin interactions from megabase scale DNA sequence☆33Updated last year
- ☆42Updated 3 months ago
- Code for reproducing the Sei manuscript results☆17Updated 3 years ago