emiraldi / infTRN_lassoStARSLinks
Transcriptional regulatory network inference from gene expression and prior information with LASSO-StARS
☆15Updated 3 years ago
Alternatives and similar repositories for infTRN_lassoStARS
Users that are interested in infTRN_lassoStARS are comparing it to the libraries listed below
Sorting:
- Multi-study integration of cellular trajectories☆19Updated 5 years ago
- 🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.…☆28Updated 3 years ago
- Alignment and antibody assembly pipelines for Croote et al. (Science, 2018)☆10Updated 3 years ago
- Mean Alterations Using Discrete Expression☆14Updated last year
- netSmooth: A Network smoothing based method for Single Cell RNA-seq imputation☆27Updated last year
- epigenome analysis to rank transcription factors☆13Updated 5 years ago
- Matrix factorization model for interpreting single cell gene expression in biologically heterogeneous data☆21Updated last year
- Code associated with MIX-seq manuscript☆15Updated 4 years ago
- R package with motifs for use with chromVAR☆28Updated 7 years ago
- Method for identifying trait-relevant gene annotations from GWAS summary statistics.☆18Updated 2 years ago
- Fast motif matching in R☆47Updated last year
- Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles☆29Updated 5 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆29Updated 10 months ago
- HiC-Reg is a tool to predict Hi-C contact counts from one-dimensional regulatory signals☆11Updated 4 years ago
- Code for EpiMap data browser☆14Updated last year
- ☆12Updated last year
- Comparison of dimensionality reduction methods☆30Updated 5 years ago
- WES HLA Typing based on multiple alternative tools☆17Updated 4 years ago
- benchmark for single-cell RNA-seq imputation methods☆26Updated last year
- Data and analysis for the Splatter paper☆29Updated 7 years ago
- Predicted cell-cell interactions of the aging mouse brain☆20Updated 5 years ago
- Code to reproduce analyses in Nasser, Bergman, Fulco, Guckelberger, Doughty et al Nature 2021☆15Updated 4 years ago
- IRIS: Isoform peptides from RNA splicing for Immunotherapy target Screening☆24Updated 10 months ago
- CellAnn☆12Updated last year
- cancereffectsizeR: Estimate somatic mutation rates and quantify selection in cancer☆18Updated last month
- CellR: single-cell RNA-Seq guided deconvolution of cellular composition from bulk-tissue RNA-Seq☆18Updated 4 years ago
- Marker Selection by matching manifolds and elastic net☆23Updated 8 months ago
- Workflow for the Association of T-cell receptors from 3' single-cell RNA-seq (WAT3R)☆21Updated 2 years ago
- ImReP is a computational method for rapid and accurate profiling of the adaptive immune repertoire from regular RNA-Seq data.☆12Updated last year
- Bead-based single-cell atac processing☆33Updated 3 years ago