emiraldi / infTRN_lassoStARSLinks
Transcriptional regulatory network inference from gene expression and prior information with LASSO-StARS
☆15Updated 3 years ago
Alternatives and similar repositories for infTRN_lassoStARS
Users that are interested in infTRN_lassoStARS are comparing it to the libraries listed below
Sorting:
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆44Updated 3 months ago
- Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles☆30Updated 5 years ago
- Publication Page for the Noack et al. 2021 Nature Neuroscience paper☆10Updated 3 years ago
- Cell age determination by scATAC-seq and bulk-ATAC-seq☆32Updated last year
- Causal inference, differential expression, and co-expression for scRNA-seq☆19Updated last week
- ☆32Updated 11 months ago
- PECA is a software for inferring context specific gene regulatory network from paired gene expression and chromatin accessibility data☆45Updated 2 months ago
- Analyzing chromatin accessibility data in R☆18Updated 2 years ago
- Analytical tools and pipelines for bulk and single cell epigenomic and human genetic data☆27Updated 5 years ago
- ☆39Updated 4 months ago
- Matrix factorization model for interpreting single cell gene expression in biologically heterogeneous data☆22Updated last year
- ☆52Updated last year
- Single-cell Case Control Analysis☆52Updated last week
- R package IReNA☆29Updated last year
- Multi-omics profiling of peripheral immune system response to SARS-CoV-2 infection☆41Updated 4 years ago
- This repository contains code for the evaluation of epithelial-to-mesenchymal transition states in cancer.☆13Updated 2 years ago
- scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper☆25Updated 3 years ago
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆35Updated 4 years ago
- ChromSCape☆14Updated 5 months ago
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆41Updated 11 months ago
- BioTIP: Biological Tipping-Point Identification and Characterization☆23Updated 2 months ago
- Repo for website and other code for mouse sci-ATAC-seq project☆28Updated 5 years ago
- ☆39Updated 4 years ago
- ☆32Updated 3 years ago
- ☆12Updated 6 years ago
- Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles☆32Updated 8 months ago
- ☆13Updated last year
- ☆25Updated 3 years ago
- Fast motif matching in R☆46Updated last year
- Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆16Updated 4 years ago