emiraldi / infTRN_lassoStARS
Transcriptional regulatory network inference from gene expression and prior information with LASSO-StARS
☆14Updated 2 years ago
Related projects ⓘ
Alternatives and complementary repositories for infTRN_lassoStARS
- Method for identifying trait-relevant gene annotations from GWAS summary statistics.☆17Updated 2 years ago
- Code associated with MIX-seq manuscript☆14Updated 4 years ago
- 🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.…☆24Updated 3 years ago
- Fast motif matching in R☆43Updated 9 months ago
- netSmooth: A Network smoothing based method for Single Cell RNA-seq imputation☆27Updated 6 months ago
- Multi-study integration of cellular trajectories☆18Updated 4 years ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆38Updated 8 months ago
- Comparison of dimensionality reduction methods☆30Updated 4 years ago
- Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles☆27Updated 4 years ago
- Predicted cell-cell interactions of the aging mouse brain☆19Updated 5 years ago
- Matrix factorization model for interpreting single cell gene expression in biologically heterogeneous data☆20Updated 7 months ago
- epigenome analysis to rank transcription factors☆13Updated 4 years ago
- Tools for assessing clustering robustness☆22Updated last week
- A deep learning-based tool for alignment and integration of single cell genomic data across multiple datasets, species, conditions, batch…☆34Updated 3 years ago
- Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆15Updated 2 years ago
- Probabilistic gene expression barcodes for cell type annotation☆25Updated 2 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆28Updated 3 months ago
- Perform differential expression analysis on multi-sample single cell datasets using linear mixed models☆20Updated 2 weeks ago
- ☆17Updated 6 months ago
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆33Updated 3 years ago
- A single-cell and spatial RNA-seq database for Alzheimer’s Disease☆19Updated 4 months ago
- ☆34Updated 6 months ago
- R package for Flexible dot plots☆26Updated 2 years ago
- Bead-based single-cell atac processing☆31Updated 3 years ago
- Batch Effect Correction of RNA-seq Data through Sample Distance Matrix Adjustment☆17Updated 3 years ago
- Code for "Single cell transcriptomes from human kidneys reveal the cellular identity of renal tumours"☆23Updated 6 years ago
- Marker Selection by matching manifolds and elastic net☆23Updated last month
- Scripts to run and benchmark scRNA-seq cell cluster labeling methods☆47Updated 4 years ago
- An R implementation of the Gene Frequency - Inverse Cell Frequency method for single cell data normalization☆17Updated last year
- pipelines to process scRNA-seq data☆11Updated 3 years ago