Transcriptional regulatory network inference from gene expression and prior information with LASSO-StARS
☆15May 3, 2022Updated 3 years ago
Alternatives and similar repositories for infTRN_lassoStARS
Users that are interested in infTRN_lassoStARS are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Task-based gene regulatory network inference using single-cell or bulk gene expression data conditioned on a prior network.☆54Jul 8, 2024Updated last year
- First version of PORE-cupine. Detecting SHAPE modification using direct RNA sequencing☆14Jul 2, 2023Updated 2 years ago
- SINCERITIES is a tool for inferring gene regulatory networks from time-stamped cross-sectional single cell transcriptional expression pro…☆15Oct 16, 2017Updated 8 years ago
- A VGAE-based model to infer transcription factor regulatory network☆28Jul 25, 2022Updated 3 years ago
- Weighted Nearest Neighbors Analysis implemented in Python (pyWNN)☆20Oct 7, 2021Updated 4 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- R integration for edlib, a C/C++ library for pairwise sequence alignment using edit distance (Levenshtein distance).☆11Jul 20, 2025Updated 8 months ago
- ☆35Mar 17, 2026Updated 3 weeks ago
- A “data light” TF-network mapping algorithm using only gene expression and genome sequence data.☆13May 31, 2021Updated 4 years ago
- University of Chicago electronic dissertation LaTeX class and template☆23Dec 10, 2025Updated 4 months ago
- NaRnEA (Nonparametric analytical Rank-based Enrichment Analysis)☆11Mar 2, 2023Updated 3 years ago
- Code repository for macsGESTALT single cell lineage tracing analysis https://doi.org/10.1101/2020.08.11.245787☆10May 10, 2021Updated 4 years ago
- ☆10Oct 15, 2025Updated 6 months ago
- Python scripts for matching output of Pacific Biosciences IsoSeq RNA-seq pipeline to an annotation file.☆23Sep 24, 2015Updated 10 years ago
- ☆19Aug 29, 2025Updated 7 months ago
- Serverless GPU API endpoints on Runpod - Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Collisional cross-section prediction for modified and multiconformational peptides☆13Apr 8, 2026Updated last week
- R package: TopDom - An efficient and Deterministic Method for identifying Topological Domains in Genomes☆22May 11, 2023Updated 2 years ago
- CORNAS is a fast method for reliable DEG calls in unreplicated conditions.☆13Jul 14, 2019Updated 6 years ago
- Transcription Factor Binding Prediction from ATAC-seq and scATAC-seq with Deep Neural Networks☆29Mar 19, 2026Updated 3 weeks ago
- R package IReNA☆30Nov 13, 2024Updated last year
- A collection of visualizations for genomics related information for use with Jupyter notebooks.☆10Feb 28, 2022Updated 4 years ago
- ☆10Mar 19, 2020Updated 6 years ago
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆33Jun 3, 2022Updated 3 years ago
- Lineage Tracing by Integrating Mutation and Transcriptomic data☆13Jun 16, 2020Updated 5 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Seqscope codes☆11Nov 28, 2021Updated 4 years ago
- ☆27May 29, 2023Updated 2 years ago
- genome sequence alignment☆14Oct 9, 2019Updated 6 years ago
- ☆55Aug 1, 2024Updated last year
- Building upon BWA-MEM2, this repository includes performance improvements to the seeding and mate-rescue steps.☆13Oct 15, 2021Updated 4 years ago
- netSmooth: A Network smoothing based method for Single Cell RNA-seq imputation☆28May 15, 2024Updated last year
- A python package for chromVAR☆33May 1, 2023Updated 2 years ago
- Interactive R package to quantify, analyse and visualise alternative splicing☆37Mar 9, 2026Updated last month
- ☆12Jan 31, 2023Updated 3 years ago
- Serverless GPU API endpoints on Runpod - Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆57Jun 29, 2023Updated 2 years ago
- Analytical tools and pipelines for bulk and single cell epigenomic and human genetic data☆26Nov 17, 2020Updated 5 years ago
- ☆59Mar 18, 2026Updated 3 weeks ago
- Updated scripts and pipelines for processing GESTALT data at single-cell resolution☆20May 22, 2021Updated 4 years ago
- 🌓 Allele specific analyses across cell states and conditions☆10Nov 28, 2022Updated 3 years ago
- Negative binomial maximum likelihood estimate implementation in Python using L-BFGS-B☆15Jan 27, 2022Updated 4 years ago
- ☆13Mar 27, 2026Updated 2 weeks ago