km : a software for RNA-seq investigation using k-mer decomposition
☆10Apr 8, 2025Updated last year
Alternatives and similar repositories for km
Users that are interested in km are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- pip install patchelf. patchelf Python wheel for PyPI.☆11Apr 2, 2026Updated last week
- SeqOthello supports fast coverage query and containment query.☆12May 8, 2019Updated 6 years ago
- Bioinformatics 2020: FastSK: Fast and Accurate Sequence Classification by making gkm-svm faster and scalable. https://fastsk.readthedocs.…☆21Dec 8, 2022Updated 3 years ago
- A curated list of awesome deep learning applications in the field of computational biology☆11Aug 3, 2016Updated 9 years ago
- MerCat: python code for versatile k-mer counting and diversity estimation for database independent property analysis for meta -ome data☆18Nov 30, 2022Updated 3 years ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Let's get started!☆15Oct 21, 2019Updated 6 years ago
- Shape Changes In Selecting Sample Outliers in RNA-seq☆12Jul 3, 2022Updated 3 years ago
- ☆12Oct 24, 2017Updated 8 years ago
- Build single sample pair-based (rule-based) classifiers using top-score pairs or random forest for multi-class problems.☆13May 1, 2023Updated 2 years ago
- BACNET is a Java based platform to develop website for multi-omics analysis☆13Feb 16, 2026Updated last month
- A collection of open source bioinformatics tools developed and used by Addgene.☆11Sep 9, 2025Updated 7 months ago
- ☆12Jul 6, 2023Updated 2 years ago
- Detection of Circular RNA and Fusions from RNA-Seq☆32Aug 14, 2018Updated 7 years ago
- Accompanying scripts and material to conduct a temporal EFA on ERP data as explained in Scharf, Widmann, Bonmassar & Wetzel (2021). Pleas…☆10Aug 5, 2022Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- Python routines for generating simple models of DNA☆13Oct 19, 2025Updated 5 months ago
- in silico plasmid extraction☆13Sep 18, 2017Updated 8 years ago
- Simulate pseudo-bulk RNAseq samples from scRNAseq expression data☆18Updated this week
- ORF Quantification pipeline for Alternative Splicing☆16May 11, 2021Updated 4 years ago
- Parallel k-mer indexing for biological sequences☆12Dec 14, 2018Updated 7 years ago
- The NIfTI-MRS data standard: specification, code, and example data.☆18Jun 3, 2024Updated last year
- ☆10Oct 31, 2025Updated 5 months ago
- Identify differentially expressed k-mers between RNA-Seq datasets☆11Mar 1, 2021Updated 5 years ago
- Multifractal analysis in Matlab and Python☆10Mar 25, 2020Updated 6 years ago
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- Mapping-free software for fishing relevant reads in an RNA-Seq sample☆19Dec 9, 2020Updated 5 years ago
- ArangoDB management environment☆14Jun 15, 2018Updated 7 years ago
- Recursive Neural Networks implemented with Tensorflow☆13Nov 5, 2019Updated 6 years ago
- Simple tokenised template system for SGE☆10Mar 1, 2023Updated 3 years ago
- The REDCap hook framework is a means to organize and deploy custom hooks in a single project or across the entire instance.☆17Nov 1, 2023Updated 2 years ago
- Various automated MATLAB pipelines for preprocessing EEG☆13Feb 25, 2020Updated 6 years ago
- Encoder for unicode to RTF 1.5 command sequences☆19Updated this week
- Gene Set Enrichment Analysis in Python☆11Oct 26, 2018Updated 7 years ago
- Recreation of the DNA Sequence Classification Paper☆12Oct 27, 2016Updated 9 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- DCC uses output from the STAR read mapper to systematically detect back-splice junctions in next-generation sequencing data. DCC applies …☆38Aug 4, 2022Updated 3 years ago
- https://kaneplusplus.github.io/listdown☆27Mar 27, 2023Updated 3 years ago
- aCcelerated Alignment-FrEe sequence analysis☆13May 8, 2018Updated 7 years ago
- A pipeline for making SWIft Genomes in a Graph (SWIGG) using k-mers☆22Nov 22, 2019Updated 6 years ago
- NOCAD - Network based Observability and Controlability Analysis of Dynamical Systems toolbox for MATLAB and Octave☆13Jul 15, 2019Updated 6 years ago
- Confidence In Network Meta-Analysis☆14Jun 24, 2021Updated 4 years ago
- mRNN is an implementation of a Gated Recurrent Unit (GRU) network for classification of transcripts as either coding or noncoding.☆22Dec 6, 2018Updated 7 years ago