mostafavilabuw / EnformerAssessmentLinks
☆25Updated last year
Alternatives and similar repositories for EnformerAssessment
Users that are interested in EnformerAssessment are comparing it to the libraries listed below
Sorting:
- code to run EPInformer for gene expression prediction and gene-enhancer link prediction☆44Updated 3 months ago
- This repository hosts a minimal version of a Python API for BPNet.☆53Updated 2 months ago
- ☆26Updated 8 months ago
- CREsted is a Python package for training sequence-based deep learning models on scATAC-seq data, for capturing enhancer code and for desi…☆53Updated this week
- Decima is a Python library to train sequence models on single-cell RNA-seq data.☆58Updated this week
- A method for analyzing scATAC-seq experiments.☆34Updated 6 months ago
- scooby: Modeling multi-modal genomic profiles from DNA sequence at single-cell resolution.☆49Updated last month
- High-definition modeling of chromatin + transcriptomics data☆26Updated 8 months ago
- Pipeline to run scE2G☆32Updated 2 months ago
- A python package for chromVAR☆32Updated 2 years ago
- A lite implementation of tfmodisco, a motif discovery algorithm for genomics experiments.☆86Updated 3 months ago
- ExplaiNN: interpretable and transparent neural networks for genomics☆49Updated 8 months ago
- Benchmark of GRNs using the GRETA pipeline☆30Updated last week
- Toolset for training quantitative sequence to function models.☆23Updated last year
- Dataloader for applying sequence models to personalized genomics☆27Updated last week
- Tools for sgRNA calling in direct capture Perturb-seq data☆39Updated 2 years ago
- ☆24Updated 3 months ago
- Deep learning model built to quantitatively predict the activities of developmental and housekeeping enhancers from DNA sequence in Droso…☆71Updated 2 years ago
- Pytorch implementation of the Borzoi model from Calico, and Flashzoi, a 3x faster Borzoi enhancement.☆89Updated last month
- Chromatin interaction aware gene regulatory modeling with graph attention networks☆28Updated 2 years ago
- deep learning-inspired explainable sequence model for transcription initiation☆100Updated 9 months ago
- Molecular interactions inference from single-cell multi-omics data☆30Updated 2 months ago
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆67Updated 5 months ago
- https://www.biorxiv.org/content/10.1101/2023.07.03.547592v2☆32Updated 11 months ago
- C.Origami, a prediction and screening framework for cell type-specific 3D chromatin structure.☆82Updated last year
- Task-based gene regulatory network inference using single-cell or bulk gene expression data conditioned on a prior network.☆54Updated last year
- code to run sei and obtain sei and sequence class predictions☆109Updated 3 years ago
- ☆69Updated last month
- Repository for modeling PRO-cap data with the BPNet-like model, ProCapNet.☆17Updated 4 months ago
- Single cell omics biology annotations☆51Updated 8 months ago