smaslova / AI-TAC
☆27Updated last year
Alternatives and similar repositories for AI-TAC:
Users that are interested in AI-TAC are comparing it to the libraries listed below
- ☆25Updated 6 months ago
- code to run EPInformer for gene expression prediction and gene-enhancer links prioritization☆41Updated 4 months ago
- ☆38Updated 4 years ago
- ACTIONet single-cell analysis framework☆38Updated 6 months ago
- Code for reproducing "Exploring genetic interaction manifolds constructed from rich single-cell phenotypes"☆51Updated 4 years ago
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆61Updated 11 months ago
- Imputation method for scRNA-seq based on low-rank approximation☆74Updated last year
- Transcription Factor Binding Prediction from ATAC-seq and scATAC-seq with Deep Neural Networks☆28Updated this week
- Knowledge-primed neural networks☆36Updated 2 years ago
- C.Origami, a prediction and screening framework for cell type-specific 3D chromatin structure.☆74Updated 9 months ago
- Code for reproducing the Sei manuscript results☆16Updated 3 years ago
- Task-based gene regulatory network inference using single-cell or bulk gene expression data conditioned on a prior network.☆48Updated 9 months ago
- Decima is a Python library to train sequence models on single-cell RNA-seq data.☆31Updated last week
- Nextflow pipeline for cross-species integration and assessment of single cell RNA-seq datasets☆36Updated last year
- A generative topic model that facilitates integrative analysis of large-scale single-cell RNA sequencing data.☆49Updated 3 years ago
- Tools for sgRNA calling in direct capture Perturb-seq data☆32Updated last year
- A scalable python-based framework for gene regulatory network inference using tree-based ensemble regressors.☆56Updated last year
- Fast motif matching in R☆47Updated last year
- A BLAST-like toolkit for large-scale scRNA-seq data querying and annotation.☆91Updated 8 months ago
- ☆10Updated last year
- Geometry-preserving random sampling☆80Updated 5 months ago
- Molecular interactions inference from single-cell multi-omics data☆24Updated 5 months ago
- Deep Learning Method to Identify Cancer Associated TCRs☆46Updated 2 years ago
- Identifying tumor cells at the single-cell level using machine learning☆48Updated 5 months ago
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆40Updated 3 months ago
- ⚙️ Matching T-cell repertoire against a database of TCR antigen specificities☆38Updated 6 years ago
- ☆55Updated 6 years ago
- A repository for the design and analysis of pooled single cell RNA-seq perturbation experiments.☆87Updated 5 years ago
- Repository for modeling PRO-cap data with the BPNet-like model, ProCapNet.☆13Updated last week
- Code for the paper "Integrating regulatory DNA sequence and gene expression to predict genome-wide chromatin accessibility across cellula…☆44Updated 3 years ago