☆33Dec 2, 2022Updated 3 years ago
Alternatives and similar repositories for DeepExpression
Users that are interested in DeepExpression are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Predicting gene expression levels from genomic sequences☆54Jun 24, 2020Updated 5 years ago
- Computational framework to identify promoter sequences from RNA-seq datasets☆11Sep 27, 2023Updated 2 years ago
- ☆30May 15, 2023Updated 2 years ago
- The official code implementation for Chromoformer in PyTorch. (Lee et al., Nature Communications. 2022)☆38Aug 16, 2023Updated 2 years ago
- Code to reproduce analysis in "Addressing confounding artifacts in reconstruction of gene co-expression networks"☆16Apr 22, 2019Updated 7 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆16May 22, 2025Updated 11 months ago
- https://www.biorxiv.org/content/10.1101/2023.07.03.547592v2☆32Jan 22, 2025Updated last year
- PyTorch implementation of Basenji2.☆21Apr 29, 2025Updated last year
- Linseed: LINear Subspace identification for gene Expresion Deconvolution☆33Aug 22, 2025Updated 8 months ago
- ☆36Sep 25, 2022Updated 3 years ago
- Chromatin interaction aware gene regulatory modeling with graph attention networks☆28Feb 21, 2023Updated 3 years ago
- ☆13Apr 22, 2021Updated 5 years ago
- Scripts for building computational models of gene regulation with tensorflow☆11Jan 21, 2020Updated 6 years ago
- Scripts to create cartoons of 3D genomes☆12Feb 27, 2024Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Identification of differentially methylated genes in biomedical data☆15Jan 26, 2026Updated 3 months ago
- ☆19Oct 21, 2024Updated last year
- Coding-Non-Coding Index (CNCI)☆42Mar 6, 2018Updated 8 years ago
- BPNet manuscript code.☆12Dec 1, 2020Updated 5 years ago
- ☆27May 29, 2023Updated 2 years ago
- This repository aims to serve as an index of the work described at Salmen & De Jonghe et. al 2022☆24Feb 21, 2022Updated 4 years ago
- The complete sequence of a Chinese individual☆12Oct 8, 2024Updated last year
- Data analysis pipeline for scNT-seq (single-cell metabolically labeled new RNA tagging sequencing)☆16Jun 30, 2023Updated 2 years ago
- reorganize paper of deconvolution method☆11Dec 14, 2023Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- a quick shiny server in a Singularity Container. For @griznog!☆19Nov 6, 2018Updated 7 years ago
- Tools for Adaptive Immune Receptor Sequence-Based Machine and Deep Learning☆13Apr 3, 2026Updated last month
- DeepSEA in TensorFlow☆32May 24, 2017Updated 8 years ago
- An R package for automatically aggregating and summarizing lncRNA analysis results.☆16Mar 5, 2019Updated 7 years ago
- Notebooks accompanying the paper "Navigating the pitfalls of applying machine learning in genomics"☆46Oct 9, 2023Updated 2 years ago
- Expedition suite for computing, visualizing, and analyzing single-cell alternative splicing data☆11Jun 29, 2017Updated 8 years ago
- documentation for trackViewer☆29Aug 6, 2019Updated 6 years ago
- The DJIN model of aging.☆12Aug 11, 2022Updated 3 years ago
- Sequential regulatory activity predictions with deep convolutional neural networks.☆468Jan 15, 2026Updated 3 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆51Mar 17, 2023Updated 3 years ago
- Cython bindings and Python interface to the MEME suite, a collection of tools for the analysis of sequence motifs.☆17Mar 7, 2026Updated last month
- ExplaiNN: interpretable and transparent neural networks for genomics☆49Apr 1, 2025Updated last year
- ☆23May 6, 2024Updated last year
- A python library for creating simulated regulatory DNA sequences☆39Feb 22, 2023Updated 3 years ago
- Hungarian tokenizer.☆15Mar 15, 2022Updated 4 years ago
- Ontoclick - A web browser extension to turn highlighted text into a proper Ontology term.☆13Jun 2, 2023Updated 2 years ago