JanZrimec / DeepExpressionLinks
β34Updated 2 years ago
Alternatives and similar repositories for DeepExpression
Users that are interested in DeepExpression are comparing it to the libraries listed below
Sorting:
- Knowledge-primed neural networksβ38Updated 2 years ago
- πΊ Exploring novel tumor epitope identificationβ36Updated 5 years ago
- Predicting gene expression levels from genomic sequencesβ54Updated 5 years ago
- β25Updated 4 years ago
- Generate Robust Disease-Specific Response Signatures from the LINCS-L1000 Dataβ15Updated 3 years ago
- β38Updated last year
- ExplaiNN: interpretable and transparent neural networks for genomicsβ49Updated 6 months ago
- Saluki, a method to predict mRNA half-lives from sequenceβ25Updated 3 years ago
- Tied Diffusion for Subnetwork Discovery (TieDIE)β37Updated 3 years ago
- β36Updated 7 months ago
- Computational framework to identify promoter sequences from RNA-seq datasetsβ10Updated 2 years ago
- Companion to "A genome-wide almanac of co-essential modules assigns function to uncharacterized genes" (https://doi.org/10.1101/827071)β27Updated 3 years ago
- A deep learning approach for predicting high-confidence neoantigens by considering both the presentation possibilities of mutant peptidesβ¦β44Updated 2 years ago
- Prize-Collecting Steiner Forests for Interactomesβ62Updated last year
- MHC Class I and Class II neoantigen binding predictionβ32Updated 2 months ago
- a python package for KEGG pathway enrichment analysis with multiple gene lists.β36Updated 7 years ago
- DOLPHIN: Advances Single-cell RNA-seq Analysis Beyond Gene-Level by Integrating Exon-Level Quantification and Junction Reads with Deep Neβ¦β12Updated 2 months ago
- HLA-II ligand predictor.β44Updated 2 years ago
- APA Regression Net - Predict and Engineer Alternative Polyadenylationβ39Updated 4 years ago
- immuneML is a platform for machine learning analysis of adaptive immune receptor repertoire data.β69Updated 2 weeks ago
- Fast Gene Set Enrichment Analysis (GSEA) implementation of the prerank algorithm. Use Loess interpolation of bimodal ES distribution for β¦β52Updated 4 months ago
- Seq2Neo: a comprehensive pipeline for cancer neoantigen immunogenicity predictionβ21Updated 2 years ago
- β18Updated last year
- β18Updated last year
- Standard set of data-loaders for training and making predictions for DNA sequence-based models.β82Updated last year
- Code for the analyses in the human reference interactome paper.β28Updated 2 years ago
- Notebooks accompanying the paper "Navigating the pitfalls of applying machine learning in genomics"β45Updated last year
- Code for reproducing the Sei manuscript resultsβ17Updated 3 years ago
- β24Updated 3 weeks ago
- Code from "Deep Learning Of The Regulatory Grammar Of Yeast 5β² Untranslated Regions From 500,000 Random Sequences"β15Updated 8 years ago