JanZrimec / DeepExpressionLinks
☆33Updated 2 years ago
Alternatives and similar repositories for DeepExpression
Users that are interested in DeepExpression are comparing it to the libraries listed below
Sorting:
- Knowledge-primed neural networks☆38Updated 2 years ago
- Predicting gene expression levels from genomic sequences☆54Updated 5 years ago
- ☆24Updated 4 years ago
- ☆38Updated last year
- 🏺 Exploring novel tumor epitope identification☆34Updated 4 years ago
- Saluki, a method to predict mRNA half-lives from sequence☆25Updated 2 years ago
- ☆18Updated last year
- ExplaiNN: interpretable and transparent neural networks for genomics☆49Updated 4 months ago
- https://www.biorxiv.org/content/10.1101/2023.07.03.547592v2☆29Updated 7 months ago
- APA Regression Net - Predict and Engineer Alternative Polyadenylation☆39Updated 3 years ago
- Generate Robust Disease-Specific Response Signatures from the LINCS-L1000 Data☆15Updated 3 years ago
- Deep learning model built to quantitatively predict the activities of developmental and housekeeping enhancers from DNA sequence in Droso…☆66Updated 2 years ago
- Seq2Neo: a comprehensive pipeline for cancer neoantigen immunogenicity prediction☆21Updated 2 years ago
- immuneML is a platform for machine learning analysis of adaptive immune receptor repertoire data.☆68Updated last week
- Scripts for building computational models of gene regulation with tensorflow☆27Updated 2 years ago
- This repository aims to serve as an index of the work described at Salmen & De Jonghe et. al 2022☆23Updated 3 years ago
- Code for the paper "Integrating regulatory DNA sequence and gene expression to predict genome-wide chromatin accessibility across cellula…☆44Updated 4 years ago
- ☆36Updated 6 months ago
- a python package for KEGG pathway enrichment analysis with multiple gene lists.☆36Updated 7 years ago
- Computational framework to identify promoter sequences from RNA-seq datasets☆10Updated last year
- Comparing performance across many methodological dimensions among tools that predict RNA after TF knockdowns and overexpression.☆19Updated last week
- TCRconv is a deep learning model for predicting recognition between T cell receptors and epitopes. It uses protBERT embeddings for the TC…☆25Updated 2 years ago
- Transcription Factor Binding Prediction from ATAC-seq and scATAC-seq with Deep Neural Networks☆28Updated 4 months ago
- Deep neural networks for predicting CpG methylation☆37Updated 8 years ago
- A deep learning approach for predicting high-confidence neoantigens by considering both the presentation possibilities of mutant peptides…☆44Updated 2 years ago
- Code for reproducing the Sei manuscript results☆17Updated 3 years ago
- accurate prediction of promoter activity and variant effects from massive parallel reporter assays☆39Updated last month
- ☆23Updated 6 months ago
- Scripts for building computational models of gene regulation with tensorflow☆11Updated 5 years ago
- Deep Learning Method to Identify Cancer Associated TCRs☆47Updated 3 years ago