JanZrimec / DeepExpressionLinks
☆33Updated 2 years ago
Alternatives and similar repositories for DeepExpression
Users that are interested in DeepExpression are comparing it to the libraries listed below
Sorting:
- Knowledge-primed neural networks☆38Updated 2 years ago
- Predicting gene expression levels from genomic sequences☆54Updated 5 years ago
- 🏺 Exploring novel tumor epitope identification☆36Updated 5 years ago
- ☆38Updated last year
- HLA-II ligand predictor.☆45Updated 2 years ago
- immuneML is a platform for machine learning analysis of adaptive immune receptor repertoire data.☆69Updated this week
- DRUGZ software☆24Updated 4 years ago
- Generate Robust Disease-Specific Response Signatures from the LINCS-L1000 Data☆15Updated 3 years ago
- ☆25Updated 4 years ago
- CLUMPS adapted to post-translational modifications.☆10Updated 5 months ago
- Seq2Neo: a comprehensive pipeline for cancer neoantigen immunogenicity prediction☆21Updated 2 years ago
- This repository contains the code for our manuscript - 'The evolution, evolvability, and engineering gene regulatory DNA'☆96Updated 2 years ago
- ☆27Updated 6 months ago
- Notebooks accompanying the paper "Navigating the pitfalls of applying machine learning in genomics"☆45Updated 2 years ago
- Prize-Collecting Steiner Forests for Interactomes☆62Updated last year
- ExplaiNN: interpretable and transparent neural networks for genomics☆49Updated 6 months ago
- Extension of the WGCNA program to improve the eigengene similarity of modules and increase the overall number of genes in modules.☆65Updated 4 years ago
- accurate prediction of promoter activity and variant effects from massive parallel reporter assays☆42Updated 3 months ago
- Comparison of Adaptive Immune Receptor Repertoires☆28Updated 8 months ago
- Code for the analyses in the human reference interactome paper.☆28Updated 2 years ago
- A shiny-based web tool for interactive analysis of DepMap data☆24Updated 4 years ago
- GREIN : GEO RNA-seq Experiments Interactive Navigator☆50Updated 6 years ago
- MHC Class I and Class II neoantigen binding prediction☆32Updated 3 months ago
- Deep neural networks for predicting CpG methylation☆37Updated 8 years ago
- Standard set of data-loaders for training and making predictions for DNA sequence-based models.☆82Updated last year
- A deep learning approach for predicting high-confidence neoantigens by considering both the presentation possibilities of mutant peptides…☆43Updated 2 years ago
- A collection of useful functions for bioinformatics data analysis☆25Updated 3 months ago
- insilico Pathway Activation Network Decomposition Analysis (iPANDA) package. Owned by Insilico Medicine Inc. iPANDA is a pathway analysis…☆26Updated 8 years ago
- This repository aims to serve as an index of the work described at Salmen & De Jonghe et. al 2022☆24Updated 3 years ago
- APA Regression Net - Predict and Engineer Alternative Polyadenylation☆39Updated 4 years ago