yakirr / sldpLinks
Signed LD profile regression code
☆19Updated 5 months ago
Alternatives and similar repositories for sldp
Users that are interested in sldp are comparing it to the libraries listed below
Sorting:
- Big data Regression for predicting DNase I hypersensitivity☆31Updated last year
- ☆51Updated 2 years ago
- Coda: a convolutional denoising algorithm for genome-wide ChIP-seq data☆33Updated 8 years ago
- Preprocessing of single-cell RNA-Seq (deprecated)☆62Updated 6 years ago
- <<------ Use SnapATAC!!☆26Updated 6 years ago
- Code for the paper "Integrating regulatory DNA sequence and gene expression to predict genome-wide chromatin accessibility across cellula…☆44Updated 4 years ago
- A portable, flexible, parallelized tool for complete processing of massively parallel reporter assay data☆35Updated last year
- Code and simulations using biologically annotated neural networks☆21Updated 4 years ago
- R package with motifs for use with chromVAR☆28Updated 8 years ago
- ☆87Updated 5 months ago
- A method for analyzing scATAC-seq experiments.☆34Updated 6 months ago
- Annotation of genomic regions using transcription factor binding sites and epigenetic data☆41Updated 3 years ago
- BAGEL software☆28Updated last year
- ☆13Updated 2 years ago
- processes GoT amplicon data and generates a table of metrics☆32Updated 3 years ago
- ☆34Updated 6 years ago
- ☆17Updated 6 years ago
- RepEnrich is a method to estimate repetitive element enrichment using high-throughput sequencing data.☆28Updated 3 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆31Updated last year
- R package for reading in & working with NucleoATAC outputs☆26Updated 7 years ago
- ChIP-seq DC and QC Pipeline☆36Updated 4 years ago
- Robust Allele Specific Quantification and quality controL☆40Updated 4 years ago
- PECA is a software for inferring context specific gene regulatory network from paired gene expression and chromatin accessibility data☆45Updated 2 months ago
- Allele-Specific Expression by Single-Cell RNA Sequencing☆29Updated 5 years ago
- cancereffectsizeR: Estimate somatic mutation rates and quantify selection in cancer☆19Updated last week
- Fast motif matching in R☆46Updated last year
- Repository to reproduce analyses from the GTEx V6P Rare Variation Manuscript☆17Updated 8 years ago
- ☆84Updated 4 years ago
- A short tutorial to using DL and keras for genomics with sequence data.☆15Updated 5 years ago
- Functional genomics and genome-wide association studies☆69Updated 7 years ago