yakirr / sldpLinks
Signed LD profile regression code
☆17Updated last week
Alternatives and similar repositories for sldp
Users that are interested in sldp are comparing it to the libraries listed below
Sorting:
- Big data Regression for predicting DNase I hypersensitivity☆30Updated 11 months ago
- ☆51Updated last year
- <<------ Use SnapATAC!!☆25Updated 6 years ago
- Preprocessing of single-cell RNA-Seq (deprecated)☆62Updated 6 years ago
- ImReP is a computational method for rapid and accurate profiling of the adaptive immune repertoire from regular RNA-Seq data.☆28Updated 5 years ago
- Coda: a convolutional denoising algorithm for genome-wide ChIP-seq data☆33Updated 8 years ago
- Evaluation of the effect of quantification choices on RNA velocity estimates☆27Updated 3 years ago
- Generate cellular maps of differentiation manifolds with complex topologies.☆27Updated 7 years ago
- A portable, flexible, parallelized tool for complete processing of massively parallel reporter assay data☆32Updated 7 months ago
- ☆18Updated 2 years ago
- A method for analyzing scATAC-seq experiments.☆33Updated last month
- Pathway Enrichment-Guided Activity Study of Alternative Splicing (PEGASAS)☆19Updated 3 years ago
- ☆15Updated last year
- PECA is a software for inferring context specific gene regulatory network from paired gene expression and chromatin accessibility data☆44Updated last year
- Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles☆29Updated 5 years ago
- ChIP-seq DC and QC Pipeline☆35Updated 4 years ago
- R package for haplotype phasing using single-cell RNA-seq data☆13Updated 7 years ago
- Negative binomial regression for Spatial Transcriptomics data as described in Maaskola et al. 2018☆22Updated 6 years ago
- Identify cell barcodes from single-cell genomics sequencing experiments☆43Updated 3 years ago
- ☆20Updated 6 years ago
- ☆13Updated 2 years ago
- Fast motif matching in R☆46Updated last year
- ☆34Updated 6 years ago
- A tool for annotation-free differential analysis of tissue-specific pre-mRNA alternative splicing patterns☆28Updated 2 years ago
- SnapHiC: Single Nucleus Analysis Pipeline for Hi-C Data☆41Updated 2 years ago
- Allele-Specific Expression by Single-Cell RNA Sequencing☆29Updated 4 years ago
- R package with motifs for use with chromVAR☆28Updated 7 years ago
- Exon-Intron Split Analysis (EISA) in R☆16Updated 3 months ago
- easy access to benchmark datasets☆50Updated 6 years ago
- Epimap processing and analysis code repository☆33Updated 2 years ago