yakirr / sldp
Signed LD profile regression code
☆17Updated 3 weeks ago
Alternatives and similar repositories for sldp:
Users that are interested in sldp are comparing it to the libraries listed below
- Big data Regression for predicting DNase I hypersensitivity☆30Updated 6 months ago
- ☆13Updated 2 years ago
- Repository to reproduce analyses from the GTEx V6P Rare Variation Manuscript☆18Updated 7 years ago
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆37Updated 2 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆28Updated 7 months ago
- cancereffectsizeR: Estimate somatic mutation rates and quantify selection in cancer☆18Updated last month
- GTEx analysis scripts☆20Updated 8 years ago
- R package for haplotype phasing using single-cell RNA-seq data☆13Updated 7 years ago
- An R package for detecting Gene-by-Environment (GxE) interaction effects on the transcriptome using Allele Specific Expression quantified…☆21Updated 3 years ago
- Code and simulations using biologically annotated neural networks☆21Updated 3 years ago
- ImReP is a computational method for rapid and accurate profiling of the adaptive immune repertoire from regular RNA-Seq data.☆28Updated 5 years ago
- ChIP-seq DC and QC Pipeline☆34Updated 4 years ago
- R package for reading in & working with NucleoATAC outputs☆26Updated 6 years ago
- R package with motifs for use with chromVAR☆25Updated 7 years ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆43Updated last year
- A portable, flexible, parallelized tool for complete processing of massively parallel reporter assay data☆32Updated 2 months ago
- Allele-Specific Expression by Single-Cell RNA Sequencing☆28Updated 4 years ago
- A hierarchical multiscale model for inferring transcription factor binding from chromatin accessibility data.☆26Updated 8 years ago
- software package for integrative genetic association analysis☆34Updated last year
- ☆17Updated 5 years ago
- A toolkit for working with ATAC-seq data.☆24Updated 9 months ago
- Code for creating cell-type-specific regulatory element annotation files☆18Updated 9 months ago
- Python package to predict enhancer-gene interactions supervised on CRISPRi data☆14Updated last year
- Method for identifying trait-relevant gene annotations from GWAS summary statistics.☆17Updated 2 years ago
- ☆14Updated last year
- Adaptive Daisy Model to discriminate core-fitness/context-specific essential genes in large scale CRISPR-Cas9 screens☆22Updated 5 years ago
- A method for analyzing scATAC-seq experiments.☆27Updated 2 weeks ago
- A short tutorial to using DL and keras for genomics with sequence data.☆15Updated 4 years ago
- R package to detect splicing QTLs (sQTLs)☆15Updated 4 years ago
- Suite of heritability and genetic correlation estimation tools for exome-sequencing data☆33Updated 3 weeks ago