castillohair / paper-5utr-designLinks
Code for "Optimizing 5’UTRs for mRNA-delivered gene editing using deep learning"
☆22Updated last year
Alternatives and similar repositories for paper-5utr-design
Users that are interested in paper-5utr-design are comparing it to the libraries listed below
Sorting:
- HLA-II ligand predictor.☆44Updated 2 years ago
- Computational Optimization of DNA Activity (CODA)☆60Updated 4 months ago
- Stochastic Sequence Propagation - A Keras Model for optimizing DNA, RNA and protein sequences based on a predictor☆48Updated last year
- ☆77Updated last year
- RiboNN: predicting translation efficiencies from mRNA sequences☆32Updated last month
- Modeling of human 5′ UTRs enables the design of new sequences for target levels of translation and 5′ UTR variant prediction.☆50Updated 6 years ago
- HLA-I ligand predictor☆42Updated 8 months ago
- ☆39Updated last month
- Pytorch implementation of the Borzoi model from Calico, and Flashzoi, a 3x faster Borzoi enhancement.☆71Updated 2 months ago
- ERGO-II, an updated version of ERGO including more features for TCR-peptide binding prediction☆33Updated 3 years ago
- ☆18Updated last year
- Knowledge-primed neural networks☆38Updated 2 years ago
- Promoter activity measurement and modeling; artificial promoter design and testing☆12Updated 2 years ago
- Toolkit for training hyenaDNA-based autoregressive language models on DNA sequences.☆47Updated 10 months ago
- ScanFold is an RNA sequence scanning pipeline which attempts to identify potentially functional RNA secondary structures. This is done by…☆19Updated 2 years ago
- Large language modeling applied to T-cell receptor (TCR) sequences.☆56Updated 3 years ago
- ☆38Updated last year
- BigMHC predicts MHC-I (neo)epitope presentation and immunogenicity☆56Updated last year
- accurate prediction of promoter activity and variant effects from massive parallel reporter assays☆39Updated last month
- Python interface to running command-line and web-based MHC binding predictors☆98Updated 10 months ago
- Interpretation by Deep Generative Masking for Biological Sequences☆37Updated 3 years ago
- Deep Learning the T Cell Receptor Binding Specificity of Neoantigen☆84Updated 3 years ago
- MHC Class I and Class II neoantigen binding prediction☆31Updated last month
- NetTCR-2.0. Sequence-based prediction of peptide-TCR binding☆35Updated 3 years ago
- Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Jo…☆67Updated 2 years ago
- 🧛 Deep generative models for TCR sequences 🧛☆17Updated 3 years ago
- Saluki, a method to predict mRNA half-lives from sequence☆25Updated 2 years ago
- A lite implementation of tfmodisco, a motif discovery algorithm for genomics experiments.☆85Updated this week
- ☆23Updated 6 months ago
- ☆31Updated 7 months ago