Saluki, a method to predict mRNA half-lives from sequence
☆31Oct 7, 2022Updated 4 years ago
Alternatives and similar repositories for saluki_paper
Users that are interested in saluki_paper are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Code repository for the manuscript: Nucleotide dependency analysis of DNA language models reveals genomic functional elements☆30Aug 3, 2026Updated 2 months ago
- ☆17Dec 17, 2025Updated 10 months ago
- ☆18Oct 21, 2024Updated last year
- ☆14Jan 23, 2025Updated last year
- Interpretation by Deep Generative Masking for Biological Sequences☆37Dec 9, 2021Updated 4 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Identify non-B forming motifs☆15Jun 22, 2026Updated 3 months ago
- Sequential regulatory activity predictions with deep convolutional neural networks.☆477Jan 15, 2026Updated 9 months ago
- ☆19Mar 8, 2023Updated 3 years ago
- ☆99Oct 9, 2024Updated 2 years ago
- Analyze 3'UTR usage in single-cell data.☆15Sep 25, 2021Updated 5 years ago
- Interactive eQTL visualizations☆14Dec 12, 2022Updated 3 years ago
- Analyse enhancer strength based on MPRA experiments.☆13Nov 12, 2020Updated 5 years ago
- Differential Mutation Analysis☆11May 24, 2020Updated 6 years ago
- a machine learning model to identify nucleotide features determining RNA subcellular localization☆13Mar 11, 2023Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆19Mar 21, 2024Updated 2 years ago
- Concise: Keras extension for regulatory genomics☆36Dec 26, 2022Updated 3 years ago
- Code for the Framepool model☆16Feb 1, 2025Updated last year
- Snakemake pipeline for benchmarking cell-type deconvolution methods and deconvolving real bulk RNA-seq data with the use of scRNA-seq dat…☆16Apr 28, 2025Updated last year
- ExplaiNN: interpretable and transparent neural networks for genomics☆47Apr 1, 2025Updated last year
- ☆19May 22, 2025Updated last year
- RiboNN: predicting translation efficiencies from mRNA sequences☆69Sep 30, 2026Updated 2 weeks ago
- Pangolin is a deep-learning method for predicting splice site strengths.☆97Jun 17, 2024Updated 2 years ago
- PARM: Promoter Activity Regulatory Model☆27Jul 27, 2026Updated 2 months ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- code to run sei and obtain sei and sequence class predictions☆118Dec 20, 2022Updated 3 years ago
- Toolset for training quantitative sequence to function models.☆23Mar 15, 2024Updated 2 years ago
- Interpretable model of sub-cellular RNA localization.☆12Dec 19, 2022Updated 3 years ago
- Pytorch implementation of the Borzoi model from Calico, and Flashzoi, a 3x faster Borzoi enhancement.☆100Jun 10, 2026Updated 4 months ago
- Detect key Units in mosaic Tandem Repeats from representative reads from the same locus☆10Aug 2, 2023Updated 3 years ago
- ☆14Oct 17, 2024Updated 2 years ago
- Code repository for study ''Evaluating the representational power of pre-trained DNA language models for regulatory genomics"☆27Jun 26, 2024Updated 2 years ago
- A Snakemake pipeline for Quality Control of Whole Genome Sequencing data☆14Jan 18, 2022Updated 4 years ago
- Chromatin interaction aware gene regulatory modeling with graph attention networks☆32Feb 21, 2023Updated 3 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Repository for mRNA Paper and CodonBERT publication.☆147May 19, 2026Updated 4 months ago
- Repository for RecallME-v.0.1 a variant calling pipelines benchmarker and optimizer☆13Dec 18, 2023Updated 2 years ago
- SingleCell: A Python/Cython Package for Processing Single-Cell RNA-Seq Data.☆11Jan 26, 2018Updated 8 years ago
- Promoter activity measurement and modeling; artificial promoter design and testing☆13Mar 24, 2023Updated 3 years ago
- This repository hosts a minimal version of a Python API for BPNet.☆61Jul 19, 2026Updated 2 months ago
- RNA-seq prediction with deep convolutional neural networks.☆267Sep 30, 2026Updated 2 weeks ago
- A dataset for training and benchmarking deep learning models for RNA structure prediction☆71May 8, 2026Updated 5 months ago