"Representation Learning of Genomic Sequence Motifs with Convolutional Neural Networks" by Peter K. Koo and Sean R. Eddy
☆34Jan 7, 2020Updated 6 years ago
Alternatives and similar repositories for learning_sequence_motifs
Users that are interested in learning_sequence_motifs are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- deep learning toolkit (written on top of tensorflow) to streamline computational biology analysis☆22Feb 10, 2023Updated 3 years ago
- A deep learning package for predicting TF binding☆43Jan 23, 2020Updated 6 years ago
- Simple and efficient access to genomic data for deep learning models.☆43Jan 9, 2020Updated 6 years ago
- Standard set of data-loaders for training and making predictions for DNA sequence-based models.☆84Sep 3, 2024Updated last year
- ☆21Mar 20, 2017Updated 9 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Deep learning for modeling gene regulatory network☆23Sep 5, 2021Updated 4 years ago
- Deep Feature Interaction Maps (DFIM)☆53Apr 9, 2019Updated 7 years ago
- DSDE Deep Learning Club☆40Mar 28, 2019Updated 7 years ago
- A python library for creating simulated regulatory DNA sequences☆40Feb 22, 2023Updated 3 years ago
- A method to rapidly assess cell type identity using both functional and random gene sets☆14May 2, 2019Updated 7 years ago
- A short tutorial to using DL and keras for genomics with sequence data.☆16Dec 3, 2020Updated 5 years ago
- Signed LD profile regression code☆19Aug 1, 2025Updated last year
- BPNet manuscript code.☆12Dec 1, 2020Updated 5 years ago
- A pipeline to rapidly detect exogenous DNA integration sites using DNA or RNA paired-end sequencing data☆12Apr 25, 2023Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Code used in article: Tracing cell-type evolution by cross-species comparison of cell atlases☆18Aug 11, 2020Updated 6 years ago
- Ledidi turns any machine learning model into a biological sequence editor, allowing you to design sequences with desired properties.☆110Jun 23, 2026Updated last month
- Annotation-agnostic differential expression analysis of RNA-seq data via expressed regions-level or single base-level approaches☆45Mar 31, 2026Updated 4 months ago
- ☆19Oct 21, 2024Updated last year
- Deep learning model to predict degron sequences☆19Feb 24, 2023Updated 3 years ago
- "Global Importance Analysis: A Method to Quantify Importance of Genomic Features in Deep Neural Networks" by Koo et al.☆14Jun 22, 2022Updated 4 years ago
- End-to-end deep learning toolkit for predicting protein binding sites and motifs.☆45Feb 26, 2019Updated 7 years ago
- ☆27May 9, 2022Updated 4 years ago
- PanGenomePipeline☆16Apr 10, 2024Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Code from "Deep Learning Of The Regulatory Grammar Of Yeast 5′ Untranslated Regions From 500,000 Random Sequences"☆16Sep 26, 2017Updated 8 years ago
- ☆14Jun 14, 2019Updated 7 years ago
- ☆11Apr 25, 2021Updated 5 years ago
- Convolutional neural network analysis for predicting DNA sequence activity.☆268Sep 14, 2020Updated 5 years ago
- A hybrid convolutional and recurrent neural network for predicting the function of DNA sequences☆161Jan 14, 2017Updated 9 years ago
- Variational Auto Encoders for learning binding signatures of transcription factors☆15Mar 14, 2024Updated 2 years ago
- The repository keeps the files for an IPython notebook on about how to make a simple genome assembler using python☆30May 10, 2018Updated 8 years ago
- ☆13Jan 23, 2020Updated 6 years ago
- Scripts for building computational models of gene regulation with tensorflow☆27May 3, 2023Updated 3 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆21Jun 5, 2017Updated 9 years ago
- Code for the MSB publication: Exploring amino acid functions and positional subtypes in a deep mutational landscape☆10Jun 11, 2022Updated 4 years ago
- Computational reproducibility using Continuous Integration to produce verifiable end-to-end runs of scientific analysis.☆83Dec 10, 2020Updated 5 years ago
- Repo for website and other code for mouse sci-ATAC-seq project☆30Oct 1, 2020Updated 5 years ago
- Code for the paper "Integrating regulatory DNA sequence and gene expression to predict genome-wide chromatin accessibility across cellula…☆44Jun 9, 2021Updated 5 years ago
- Predicting gene expression levels from genomic sequences☆55Jun 24, 2020Updated 6 years ago
- MaveDB database web application☆13Nov 17, 2023Updated 2 years ago