XDynames / SAI-appLinks
A local version of SAI, the automated stomata measuring tool
☆24Updated last year
Alternatives and similar repositories for SAI-app
Users that are interested in SAI-app are comparing it to the libraries listed below
Sorting:
- Detecting methylation using signal-level features from Nanopore sequencing reads of plants☆62Updated last year
- Quantitative analysis of native tRNA populations using direct RNA nanopore sequencing (Lucas*, Pryszcz* et al., Nat Biotech 2023)☆16Updated last year
- DeepMicrobes: taxonomic classification for metagenomics with deep learning☆100Updated 3 years ago
- NLR annotation tool☆33Updated last year
- an R/Shiny application for interactive creation of Circos plot☆49Updated 2 years ago
- Generating iToL annotations from Spreadsheet or CSV files☆105Updated 5 years ago
- Official repo for the standalone package of Coding Potential Calculator (CPC) 2.☆25Updated 4 years ago
- CGView is a Java package for generating high-quality, zoomable maps of circular genomes.☆48Updated last year
- Accurate and rapid RiboRNA sequences Detector based on deep learning☆115Updated last year
- A utility for easy downloading of reads from next-gen sequencing repositories like NCBI SRA☆107Updated last month
- SourceTracker2☆80Updated last year
- This is the command line version of MiFish pipeline. It can also be used with any other eDNA meta-barcoding primers☆22Updated 2 months ago
- Dual barcode and primer demultiplexing for MinION sequenced reads☆41Updated 2 years ago
- A package for designing compact and comprehensive capture probe sets.☆89Updated last year
- genEra is a fast and easy-to-use command-line tool that estimates the age of the last common ancestor of protein-coding gene families.☆52Updated 10 months ago
- An R package designed for drawing gene arrow maps☆90Updated 2 weeks ago
- MetaMLST is a computational tool for in-silico Multi-Locus Sequence Typing from metagenomic data.☆16Updated 2 years ago
- A convenient pipeline for processing of multi-strain bacterial RNA-Seq experiments☆10Updated 4 years ago
- Pipeline & Reproducible analysis examples for amplicon and metagenome in microbiome☆41Updated 5 years ago
- ☆40Updated 2 years ago
- MinPath (Minimal set of Pathways) is a parsimony approach for biological pathway reconstructions using protein family predictions, achiev…☆23Updated 4 years ago
- Analyses in R and Python Using curatedMetagenomicData☆31Updated this week
- A high-performance modification detection tool in Rust☆59Updated 2 weeks ago
- ShortStack: Comprehensive annotation and quantification of small RNA genes☆94Updated 4 months ago
- EasyCodeML: A visual tool for analysis of selection using CodeML☆82Updated 2 years ago
- A simple command-line tool to download data from Joint Genome Institute databases☆52Updated 2 years ago
- A program for detection of tRNA genes☆71Updated 2 years ago
- Best practices and workflow for genome annotation☆78Updated 5 months ago
- ☆17Updated last year
- A program for degenerate primer design for broad taxonomic-range PCR for microbial ecology studies☆32Updated 2 years ago