Alternatives and similar repositories for SAI-app:

Users that are interested in SAI-app are comparing it to the libraries listed below

• novoalab / Nano-tRNAseq
  Quantitative analysis of native tRNA populations using direct RNA nanopore sequencing (Lucas*, Pryszcz* et al., Nat Biotech 2023)
  ☆14Updated 6 months ago
• akikuno / DAJIN2
  🔬 Genotyping tool for genome-edited samples, utilizing nanopore sequencer target sequencing
  ☆11Updated 2 weeks ago
• mritchielab / long_read_tools
  A catalogue of available long read sequencing data analysis tools
  ☆77Updated 3 weeks ago
• gao-lab / CPC2_standalone
  Official repo for the standalone package of Coding Potential Calculator (CPC) 2.
  ☆24Updated 3 years ago
• Trinotate / Trinotate.github.io
  web documentation for Trinotate
  ☆48Updated 2 years ago
• Hua-CM / HuaSmallTools
  Some bioinformic domestic scripts.
  ☆34Updated 2 years ago
• jingwanglab / Populus_genomic_prediction_climate_vulnerability
  ☆39Updated 2 years ago
• JanaSperschneider / EffectorP-3.0
  Prediction of apoplastic and cytoplasmic effectors in fungi and oomycetes
  ☆21Updated 2 years ago
• peterthorpe5 / public_scripts
  collection of bioinformatic scripts
  ☆30Updated 10 months ago
• xzhub / LTR_Finder
  LTR_Finder is an efficient program for finding full-length LTR retrotranspsons in genome sequences.
  ☆44Updated last year
• biomendi / TRANSCRIPTOME-ASSEMBLY-PIPELINE
  A practical guide to build de-novo transcriptome assemblies for non-model organisms (described in Montero-Mendieta et al. 2017).
  ☆27Updated 7 years ago
• junjunlab / GetTransTool
  Extract longest transcript or longest CDS transcript from GTF annotation file or gencode transcripts fasta file.
  ☆20Updated 3 years ago
• JLSteenwyk / orthohmm
  Improved Inference of Ortholog Groups using Hidden Markov Models
  ☆33Updated 3 weeks ago
• Menggg / BLINK
  BLINK: A Package for Next Level of Genome Wide Association Studies with Both Individuals and Markers in Millions
  ☆35Updated last week
• hewm2008 / BamDeal
  BamDeal: a comprehensive toolkit for bam manipulation
  ☆13Updated 2 years ago
• wrf / genomeGTFtools
  convert various features into a GFF-like file for use in genome browsers
  ☆70Updated last month
• slt666666 / NLRtracker
  NLR annotation tool
  ☆24Updated last year
• PengNi / deepsignal-plant
  Detecting methylation using signal-level features from Nanopore sequencing reads of plants
  ☆58Updated 9 months ago
• lixiang117423 / qPCRtools
  ☆19Updated last year
• irusri / Extract-intron-from-gff3
  This script will extract the intron feature gff3 and sequence from gene_exon gff3 and fasta file.
  ☆33Updated 6 years ago
• pievos101 / PopGenome
  An Efficient Swiss Army Knife for Population Genomic Analyses in R
  ☆33Updated 10 months ago
• zhangtaolab / Chorus2
  A pipeline to select oligonucleotides for fluorescence in situ hybridization (Oligo-FISH).
  ☆24Updated 3 weeks ago
• jsh58 / NGmerge
  Merging paired-end reads and removing adapters
  ☆44Updated 2 weeks ago
• molevol-ub / bitacora
  BITACORA: A Bioinformatics tool for gene family annotation
  ☆43Updated 11 months ago
• rcastelo / atena
  Analysis of transposable elements
  ☆10Updated last month
• evolgeniusteam / EvolviewDocumentation
  Documentation for Evolview
  ☆26Updated 3 years ago
• Tong-Chen / s-plot
  A simple plot library
  ☆51Updated 7 years ago
• ridgelab / JustOrthologs
  ☆35Updated 2 years ago
• Chokyotager / ORFFinder
  ORFFinder in Python
  ☆16Updated 7 months ago
• YaoLab-Bioinfo / shinyCircos-V2.0
  an R/Shiny application for interactive creation of Circos plot
  ☆48Updated last year