LDkit: a parallel computing toolkit for linkage disequilibrium analysis
☆19Sep 4, 2020Updated 5 years ago
Alternatives and similar repositories for LDkit
Users that are interested in LDkit are comparing it to the libraries listed below
Sorting:
- An innovative GWAS procedure for studies on germplasm population and plant breeding☆14Nov 16, 2020Updated 5 years ago
- Build haplotye and generate figures☆19Nov 4, 2025Updated 3 months ago
- A reliable gap filling pipeline for draft genomes☆11Sep 17, 2019Updated 6 years ago
- MP-EST estimates species trees from a set of gene trees by maximizing a pseudo-likelihood function☆12Oct 31, 2025Updated 4 months ago
- ☆15Updated this week
- Bulked-Segregant Analysis using vcf file with or without parents☆32Dec 20, 2024Updated last year
- PopLDdecay: a fast and effective tool for linkage disequilibrium decay analysis based on variant call format(VCF) files☆29Aug 15, 2024Updated last year
- Detecting Archaic Introgression from Population Genetic Data with S*☆10Jan 28, 2026Updated last month
- DeepBSA is a novel bulked segregant analysis (BSA) software for the dissection of complex traits.☆22Aug 6, 2024Updated last year
- ☆21Sep 22, 2022Updated 3 years ago
- ☆11Dec 1, 2020Updated 5 years ago
- Package for species delimitation analysis☆11Jan 7, 2025Updated last year
- A wrapper program to parallelize and automate runs of "Structure", "fastStructure" and "MavericK".☆25Jul 24, 2025Updated 7 months ago
- Programs for performing various population genetic analyses☆11Dec 2, 2024Updated last year
- xGAP is an efficient, modular, extensible and fault-tolerant pipeline for massively parallelized genomic analysis/variant discovery from …☆11Oct 21, 2020Updated 5 years ago
- PopLDdecay: a fast and effective tool for linkage disequilibrium decay analysis based on variant call format(VCF) files☆203Aug 15, 2024Updated last year
- ☆13Sep 11, 2025Updated 5 months ago
- genotyping by Mapping-free ALternate-allele detection of known VAriants☆10Mar 6, 2023Updated 2 years ago
- A haplotype analysis toolkit for natural variation study.☆31Oct 3, 2023Updated 2 years ago
- Coalescent Likelihood Under Effects of Selection - Inferring selection & allele frequency trajectories from nucleotide data☆26Jul 8, 2022Updated 3 years ago
- Calculation of pairwise Linkage Disequilibrium (LD) under a probabilistic framework☆49Nov 13, 2023Updated 2 years ago
- RRSelection: A linkage disequilibrium method to detect selection region across population VCF☆14Feb 11, 2019Updated 7 years ago
- Fast sequence vectorization for metagenomics analysis. Converts input sequences into oligonucleotide frequency vectors, fast!☆14May 12, 2024Updated last year
- a toolkit for evaluation of the lenght of k-mer in a given genome dataset for alignment-free phylogenimic analysis.☆14Nov 21, 2024Updated last year
- AncestralClust☆11Jul 9, 2025Updated 7 months ago
- Working on cotton resequencing☆11Jun 2, 2020Updated 5 years ago
- Draw genetic map (linkage map) in R☆13Nov 12, 2017Updated 8 years ago
- A novel algorithm with high detection power for BSA-Seq data analysis - the significant structural variant method☆35Aug 1, 2025Updated 7 months ago
- a broadly applicable tool for automated gene identification and retrieval☆40Feb 22, 2026Updated last week
- Program for estimating dN/dS in overlapping genes (OLGs)☆14Dec 2, 2022Updated 3 years ago
- IMa3☆13May 5, 2025Updated 9 months ago
- CoalHMM☆22Nov 4, 2013Updated 12 years ago
- ☆13Aug 18, 2023Updated 2 years ago
- Joint inference of heterozygosity rates and runs of homozygosity☆18Dec 12, 2025Updated 2 months ago
- Suit of R-scripts to perform landscape genomic analyses☆13May 25, 2020Updated 5 years ago
- A tool to infer species tree and phylogenetic network from multilocus data☆32Jul 2, 2020Updated 5 years ago
- Repository for the Data challenge about Software and Statistical Methods for Population Genetics (SSMPG 2017)☆14Sep 19, 2017Updated 8 years ago
- Organellar genome assembly☆29Jun 30, 2025Updated 8 months ago
- scripts used to download and analyze insect assemblies from GenBank☆15Feb 16, 2021Updated 5 years ago