Code Implementation for EmbedSeg, an Instance Segmentation Method for Microscopy Images
☆128Feb 14, 2024Updated 2 years ago
Alternatives and similar repositories for EmbedSeg
Users that are interested in EmbedSeg are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆22Aug 17, 2023Updated 2 years ago
- Prototype implementation of napari-integrated CNN training viewer☆14Dec 27, 2024Updated last year
- SplineDist: Automated Cell Segmentation with Spline Curves☆74Sep 29, 2024Updated last year
- ☆15Mar 10, 2020Updated 6 years ago
- ZeroCostDL4Mic: A Google Colab based no-cost toolbox to explore Deep-Learning in Microscopy☆649Mar 29, 2026Updated 4 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆24Aug 27, 2020Updated 5 years ago
- Particle tracking by solving linear assignment problem.☆67Jul 30, 2026Updated last week
- A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…☆31May 1, 2025Updated last year
- Benchmarking Large Language Models for Bio-Image Analysis Code Generation☆25Jun 3, 2026Updated 2 months ago
- Python package for deep learning based image to image transformation☆53May 1, 2026Updated 3 months ago
- Linking napari layers with Matplotlib plots☆45Jul 1, 2026Updated last month
- AICS Segmentation (One-Way) Mirror☆45Dec 16, 2020Updated 5 years ago
- StarDist plugin for ImageJ☆32May 9, 2022Updated 4 years ago
- StarDist - Object Detection with Star-convex Shapes☆1,251Feb 14, 2026Updated 5 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- official implementation of the PatchPerPix instance segmentation method☆35Jun 27, 2023Updated 3 years ago
- Website for the BioImage Model zoo -- a model zoo for bioimage analysis.☆59Jun 30, 2025Updated last year
- Fast4DReg is a Fiji script for quick drift correction in time-lapse 3D-stacks. The script can be used to correct drift in all x-, y- and/…☆41Updated this week
- Repo for the CZI Imaging Team's napari plugin Alfa Cohort collaboration☆11May 14, 2021Updated 5 years ago
- Track and lineage visualization with btrack and Napari☆45Sep 29, 2025Updated 10 months ago
- Read MRC format image files into napari using the mrcfile package from CCP-EM☆19May 17, 2024Updated 2 years ago
- ☆13Apr 27, 2020Updated 6 years ago
- A JupyterBook site for napari workshop materials☆10Jul 11, 2022Updated 4 years ago
- Bayesian multi-object tracking☆335Apr 1, 2026Updated 4 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Accelerated Pixel and Object Classifiers (APOC)☆62Apr 24, 2026Updated 3 months ago
- This repository hosts the code for HDN (associated with the paper https://arxiv.org/pdf/2104.01374.pdf) for pixel and structured noise re…☆34Nov 7, 2025Updated 9 months ago
- a generalist algorithm for cellular segmentation with human-in-the-loop capabilities☆2,303Jun 14, 2026Updated last month
- simple package for augmentation of n-dimensional arrays☆33Aug 10, 2023Updated 3 years ago
- A 3D interactivity toolbox for napari☆37Jul 8, 2025Updated last year
- ☆15Jul 29, 2022Updated 4 years ago
- Multi-Object Tracking with Integer Linear Equations☆40Jul 21, 2026Updated 2 weeks ago
- 3D Extension of the Cellpose Algorithm by Stringer et al., 2021.☆37Oct 10, 2022Updated 3 years ago
- Lectures for a napari training course☆52Aug 30, 2023Updated 2 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Cell tracking and segmentation software☆203Jul 15, 2026Updated 3 weeks ago
- Utilities for computing common accuracy metrics on cell tracking solutions with ground truth☆41Updated this week
- Instance segmentation via deep pixel embedding☆24Sep 4, 2020Updated 5 years ago
- ☆45Jul 31, 2026Updated last week
- Segment Anything for Microscopy☆708Updated this week
- StarDist PyTorch☆46Nov 13, 2022Updated 3 years ago
- Browse your OMERO database from within napari.☆40Aug 1, 2026Updated last week