Python module for registering and fusing multi-view microscopy data
☆24Mar 8, 2025Updated 11 months ago
Alternatives and similar repositories for MVRegFus
Users that are interested in MVRegFus are comparing it to the libraries listed below
Sorting:
- A napari plugin for stitching large multi-positioning datasets in 2/3D+t using multiview-stitcher☆17Jul 7, 2025Updated 7 months ago
- Python package for writing 5D numpy arrays to HDF5 files readable by both Imaris and BigDataViewer☆12Aug 13, 2021Updated 4 years ago
- Napari Visualization tool for Trackmate > 6.0 XML files for 2/3D + time tracks. Available via pip package napatrackmater.☆18Oct 8, 2025Updated 4 months ago
- Loading and saving of image data.☆10Feb 9, 2024Updated 2 years ago
- LSTree is a digital organoid and lineage tree extraction workflow for light sheet movies.☆20Aug 10, 2023Updated 2 years ago
- scalable multiscale image pyramids in python☆29Jul 25, 2024Updated last year
- Command-line client for Fractal☆48Feb 25, 2026Updated last week
- Fast writing of numpy 3d-arrays into HDF5 Fiji/BigDataViewer files.☆34Aug 22, 2024Updated last year
- Generate a multiscale, chunked, multi-dimensional spatial image data structure that can serialized to OME-NGFF.☆55Nov 13, 2025Updated 3 months ago
- Reference implementation of the Graph Exchange File Format☆36Feb 4, 2026Updated last month
- ☆15Feb 5, 2025Updated last year
- Create movies from series of key-frames in napari.☆38May 24, 2021Updated 4 years ago
- A Python toolbox for registering / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.☆106Feb 11, 2026Updated 2 weeks ago
- Process and analyze surfaces using vedo in napari.☆25May 13, 2024Updated last year
- Napari gaming☆17Dec 22, 2021Updated 4 years ago
- Robust quad-tree based registration on whole slide images☆21Apr 2, 2025Updated 11 months ago
- A nextflow based tool that wraps bfconvert and bioformats2raw to convert image data collections to OME-TIFF and OME-Zarr, respectively, i…☆27Mar 14, 2025Updated 11 months ago
- Paint segmentations directly to on-disk/remote zarr arrays☆15Jun 26, 2024Updated last year
- A napari plugin to load & deskew folders of lattice light sheet TIFFs☆13Jan 5, 2026Updated last month
- Quantitative Data Analysis for spectroscopic LEEM☆18Feb 17, 2022Updated 4 years ago
- Python libraries for loading, running and packaging bioimage.io models☆35Feb 19, 2026Updated last week
- ☆33May 2, 2025Updated 10 months ago
- CUDA-accelerated 3D BioImage Computing (ICCV BIC 2025)☆27Feb 25, 2026Updated last week
- Tools for handling FIB-SEM data and annotations☆22Apr 4, 2025Updated 10 months ago
- For laying organizational groundwork☆18Jul 12, 2020Updated 5 years ago
- A writer and reader for NGFF OME-Zarr datasets☆14Nov 2, 2021Updated 4 years ago
- Content-adaptive storage and processing of large volumetric microscopy data using the Adaptive Particle Representation (APR)☆21Aug 21, 2024Updated last year
- A lean and kind Open Microscopy Environment (OME) Next Generation File Format (NGFF) Zarr implementation.☆66Updated this week
- Optimize image processing workflows in napari☆17May 1, 2025Updated 10 months ago
- Fast global mutual information-based rigid alignment in the Fourier domain☆32Aug 3, 2024Updated last year
- Speed up coding/extending image analysis in Python.☆37Jan 20, 2026Updated last month
- Tools for distributed alignment of massive images☆93Updated this week
- python tools for BigDataViewer☆22Dec 29, 2024Updated last year
- simple package for augmentation of n-dimensional arrays☆34Aug 10, 2023Updated 2 years ago
- Quickly find the affine matrix mapping one image to another using manual correspondence points annotation☆22Aug 6, 2025Updated 6 months ago
- Particle tracking by solving linear assignment problem.☆62Updated this week
- Next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.☆155Updated this week
- 4D reconstruction of developmental trajectories using spherical harmonics☆23Mar 25, 2025Updated 11 months ago
- Python based viewer for large mulit-dimensional datasets.☆20Jan 28, 2020Updated 6 years ago