NEUBIAS / training-resourcesLinks
Resources for teaching/preparing to teach bioimage analysis
☆58Updated last week
Alternatives and similar repositories for training-resources
Users that are interested in training-resources are comparing it to the libraries listed below
Sorting:
- An automated point-set based registration algorithm for correlative light and electron microscopy (CLEM)☆20Updated 2 months ago
- A nextflow based tool that wraps bfconvert and bioformats2raw to convert image data collections to OME-TIFF and OME-Zarr, respectively, i…☆25Updated 10 months ago
- Accelerated Pixel and Object Classifiers (APOC)☆59Updated 6 months ago
- FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets☆29Updated last month
- A template repo used to make new napari plugins☆30Updated 2 weeks ago
- GPU-accelerated, OpenCL-based Random Forest Classifiers for pixel and labeled object classification in napari.☆45Updated 8 months ago
- ☆41Updated 3 weeks ago
- Process and analyze surfaces using vedo in napari.☆25Updated last year
- Track and lineage visualization with btrack and Napari☆45Updated 3 months ago
- A toolbox for registering / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.☆101Updated last week
- A 3D interactivity toolbox for napari☆37Updated 6 months ago
- A napari plugin for clustering objects according to their properties.☆89Updated last week
- napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool☆61Updated last year
- Feature extraction for labeled objects in images using regionprops from scikit-image☆55Updated 8 months ago
- PoL Bioimage Analysis Training School: GPU-Accelerated Image Analysis Track☆28Updated last year
- A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…☆30Updated 8 months ago
- ☆36Updated last year
- A napari plugin for zarr backed OME-NGFF images☆42Updated last month
- ☆49Updated last month
- StarDist plugin for napari☆38Updated last year
- Benchmarking Large Language Models for Bio-Image Analysis Code Generation☆25Updated last year
- Guides and code for 3D nuclear instance segmentation☆22Updated last month
- Python libraries for loading, running and packaging bioimage.io models☆35Updated this week
- Multiple file format reading directly into napari using pure Python☆39Updated 3 months ago
- ☆21Updated 6 months ago
- ☆51Updated 8 months ago
- Python wrapper for cudaDecon - GPU accelerated 3D deconvolution for microscopy☆71Updated last week
- MultiModal Big Image Data Sharing and Exploration☆18Updated 3 years ago
- ☆12Updated 4 months ago
- Ngio is a Python library to streamline OME-Zarr image analysis workflows.☆37Updated last week