clEsperanto / pyclesperanto_prototypeLinks
GPU-accelerated bio-image analysis focusing on 3D+t microscopy image data
☆231Updated 6 months ago
Alternatives and similar repositories for pyclesperanto_prototype
Users that are interested in pyclesperanto_prototype are comparing it to the libraries listed below
Sorting:
- Interactive image stack viewing in jupyter notebooks based on ipycanvas and ipywidgets☆166Updated 3 months ago
- Python Jupyter notebooks for BioImageAnalysis, GPU-accelerated image processing, bio-image data science and more☆143Updated 2 months ago
- A napari plugin for making animations☆87Updated last month
- A napari plugin for clustering objects according to their properties.☆87Updated this week
- Cell tracking and segmentation software☆134Updated 2 weeks ago
- GPU-accelerated general purpose image processing and image analysis in napari☆35Updated 3 months ago
- Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Python☆215Updated 7 months ago
- ☆87Updated 5 months ago
- Creating figures and animations for multi-channel images with a focus on microscopy.☆78Updated 8 months ago
- Open source Python library for building bioimage analysis pipelines☆177Updated 2 weeks ago
- Lecture materials "Bio-image analysis, biostatistics, programming and machine learning for computational biology" at the Center of Molecu…☆222Updated last year
- Image reading, metadata management, and image writing for Microscopy images in Python☆98Updated last week
- Nanoscopy library for Python (NanoPyx, the successor to NanoJ) - focused on light microscopy and super-resolution imaging☆82Updated last week
- StarDist plugin for napari☆40Updated last year
- A Python GUI-based framework for segmentation, tracking and cell cycle annotations of microscopy data☆178Updated this week
- A tool for cell instance aware segmentation in densely packed 3D volumetric images☆115Updated last week
- Implementation of next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.☆202Updated last week
- Collection of tools and scripts useful to automate microscopy workflows in ZEN Blue using Python and Open Application Development tools a…☆147Updated last month
- Bringing the ZeroCostDL4Mic experience running everywhere via easy-to-install docker images☆80Updated this week
- Cookiecutter for napari plugins☆69Updated 9 months ago
- Feature extraction for labeled objects in images using regionprops from scikit-image☆51Updated 3 months ago
- Segmentation method able to detect membrane/nuclei-labelled cells with low signal-to-noise ratio and dense packing in 2D and 3D. Availabl…☆33Updated 3 weeks ago
- BIA Bob is a Jupyter+LLM-based assistant for interacting with image data and for working on Bio-image Analysis tasks.☆119Updated 3 weeks ago
- Transformer-based cell tracking for live-cell microscopy☆83Updated last week
- ASHLAR: Alignment by Simultaneous Harmonization of Layer/Adjacency Registration☆149Updated 2 weeks ago
- Accelerated Pixel and Object Classifiers (APOC)☆56Updated last month
- SplineDist: Automated Cell Segmentation with Spline Curves☆67Updated 11 months ago
- GPU-accelerated Image Processing library for Python☆51Updated this week
- Read and write ImageJ ROI format.☆74Updated 3 months ago
- Utils and convenience functions for large-scale bio-image analysis.☆57Updated 3 weeks ago