GPU-accelerated bio-image analysis focusing on 3D+t microscopy image data
☆238Feb 21, 2025Updated last year
Alternatives and similar repositories for pyclesperanto_prototype
Users that are interested in pyclesperanto_prototype are comparing it to the libraries listed below
Sorting:
- A napari plugin for clustering objects according to their properties.☆90Updated this week
- Accelerated Pixel and Object Classifiers (APOC)☆60Jul 18, 2025Updated 7 months ago
- GPU-accelerated Image Processing library for Python☆53Updated this week
- A Python toolbox for registering / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.☆106Feb 11, 2026Updated 2 weeks ago
- GPU-accelerated, OpenCL-based Random Forest Classifiers for pixel and labeled object classification in napari.☆45May 1, 2025Updated 10 months ago
- Lecture materials "Bio-image analysis, biostatistics, programming and machine learning for computational biology" at the Center of Molecu…☆233Sep 11, 2023Updated 2 years ago
- Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Python☆221Dec 1, 2025Updated 3 months ago
- ilastik plugin for napari☆14Dec 15, 2025Updated 2 months ago
- GPU-accelerated general purpose image processing and image analysis in napari☆36May 1, 2025Updated 10 months ago
- Image reading, metadata management, and image writing for Microscopy images in Python☆114Dec 22, 2025Updated 2 months ago
- Simple, fast-loading, n-dimensional array viewer with minimal dependencies.☆88Feb 7, 2026Updated 3 weeks ago
- Linking napari layers with Matplotlib plots☆43Feb 2, 2026Updated last month
- A napari plugin for stitching large multi-positioning datasets in 2/3D+t using multiview-stitcher☆17Jul 7, 2025Updated 7 months ago
- A napari plugin to load & deskew folders of lattice light sheet TIFFs☆13Jan 5, 2026Updated last month
- Process and analyze surfaces using vedo in napari.☆25May 13, 2024Updated last year
- Interactive image stack viewing in jupyter notebooks based on ipycanvas and ipywidgets☆177Jan 17, 2026Updated last month
- A napari plugin to view and edit metadata☆13Updated this week
- SplineDist: Automated Cell Segmentation with Spline Curves☆70Sep 29, 2024Updated last year
- Multiple file format reading directly into napari using pure Python☆39Oct 15, 2025Updated 4 months ago
- Cookiecutter for napari plugins☆71Nov 6, 2024Updated last year
- Command-line client for Fractal☆48Updated this week
- BIA Bob is a Jupyter+LLM-based assistant for interacting with image data and for working on Bio-image Analysis tasks.☆130Aug 7, 2025Updated 6 months ago
- A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…☆30May 1, 2025Updated 10 months ago
- A plugin to read whole slide images within napari.☆21Nov 24, 2025Updated 3 months ago
- native Python dataclasses for the OME data model☆65Feb 12, 2026Updated 2 weeks ago
- Image registration (alignment) software for large microscopy images☆27Oct 15, 2023Updated 2 years ago
- ☆26Jan 27, 2026Updated last month
- Efficient graph data structures and algorithms for fast slicing, visualization, and editing☆13Dec 1, 2025Updated 3 months ago
- ☆51May 1, 2025Updated 10 months ago
- Cell tracking and segmentation software☆173Feb 11, 2026Updated 2 weeks ago
- Archived: control, reconstruction, and analysis code for oblique plane microscopy.☆22Apr 1, 2025Updated 11 months ago
- Generate a multiscale, chunked, multi-dimensional spatial image data structure that can serialized to OME-NGFF.☆55Nov 13, 2025Updated 3 months ago
- ☆36Mar 22, 2024Updated last year
- Fast writing of numpy 3d-arrays into HDF5 Fiji/BigDataViewer files.☆34Aug 22, 2024Updated last year
- Create movies from series of key-frames in napari.☆38May 24, 2021Updated 4 years ago
- Implementation of next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.☆225Updated this week
- napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool☆63Oct 27, 2024Updated last year
- ☆24Sep 13, 2025Updated 5 months ago
- Prototype implementation of napari-integrated CNN training viewer☆14Dec 27, 2024Updated last year