clEsperanto / pyclesperanto_prototype
GPU-accelerated bio-image analysis focusing on 3D+t microscopy image data
☆217Updated 3 months ago
Alternatives and similar repositories for pyclesperanto_prototype:
Users that are interested in pyclesperanto_prototype are comparing it to the libraries listed below
- Python Jupyter notebooks for BioImageAnalysis, GPU-accelerated image processing, bio-image data science and more☆129Updated 4 months ago
- A napari plugin for making animations☆80Updated 4 months ago
- Interactive image stack viewing in jupyter notebooks based on ipycanvas and ipywidgets☆140Updated last week
- Open source Python library for building bioimage analysis pipelines☆130Updated last week
- Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Python☆207Updated this week
- Lecture materials "Bio-image analysis, biostatistics, programming and machine learning for computational biology" at the Center of Molecu…☆201Updated last year
- Cell tracking and segmentation software☆102Updated last week
- Track cells and build cell lineages☆31Updated 5 months ago
- A Python GUI-based framework for segmentation, tracking and cell cycle annotations of microscopy data☆141Updated this week
- ☆68Updated last month
- Bringing the ZeroCostDL4Mic experience running everywhere via easy-to-install docker images☆72Updated 3 weeks ago
- A napari plugin for clustering objects according to their properties.☆81Updated last week
- Feature extraction for labeled objects in images using regionprops from scikit-image☆49Updated 3 months ago
- An ImageJ/Fiji plugin designed to effortlessly integrate Segment-Anything models (SAMs) without code.☆62Updated last month
- Segment Anything for Microscopy☆381Updated this week
- Nanoscopy library for Python (NanoPyx, the successor to NanoJ) - focused on light microscopy and super-resolution imaging☆74Updated last week
- This is the repository for a Python bioimage analysis course which establishes the fundamentals of image analysis in the context of biolo…☆133Updated 4 years ago
- Collection of tools and scripts useful to automate microscopy workflows in ZEN Blue using Python and Open Application Development tools a…☆130Updated last month
- GPU-accelerated general purpose image processing and image analysis in napari☆34Updated 2 months ago
- A tool for cell instance aware segmentation in densely packed 3D volumetric images☆104Updated last week
- BIA Bob is a Jupyter+LLM-based assistant for interacting with image data and for working on Bio-image Analysis tasks.☆102Updated last week
- ☆130Updated this week
- GPU-accelerated, OpenCL-based Random Forest Classifiers for pixel and labeled object classification in napari.☆43Updated last year
- Segmentation method able to detect membrane/nuclei-labelled cells with low signal-to-noise ratio and dense packing in 2D and 3D. Availabl…☆33Updated last month
- Loading and handling microscopy data in blender☆104Updated this week
- A python extension for the automatic alignment of a source image or a stack (movie) to a target image/reference frame.☆85Updated 2 months ago
- Read and write life sciences file formats☆133Updated 4 months ago
- Image reading, metadata management, and image writing for Microscopy images in Python☆64Updated last week
- Implementation of next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.☆169Updated last week
- The ImageJ plugin to run deep-learning models☆86Updated last week