clEsperanto / pyclesperanto_prototype
GPU-accelerated bio-image analysis focusing on 3D+t microscopy image data
☆225Updated 2 months ago
Alternatives and similar repositories for pyclesperanto_prototype
Users that are interested in pyclesperanto_prototype are comparing it to the libraries listed below
Sorting:
- Interactive image stack viewing in jupyter notebooks based on ipycanvas and ipywidgets☆157Updated this week
- Python Jupyter notebooks for BioImageAnalysis, GPU-accelerated image processing, bio-image data science and more☆137Updated last week
- Open source Python library for building bioimage analysis pipelines☆167Updated last week
- A napari plugin for making animations☆84Updated 8 months ago
- A Python GUI-based framework for segmentation, tracking and cell cycle annotations of microscopy data☆158Updated this week
- Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Python☆213Updated 4 months ago
- Bringing the ZeroCostDL4Mic experience running everywhere via easy-to-install docker images☆78Updated 3 weeks ago
- Lecture materials "Bio-image analysis, biostatistics, programming and machine learning for computational biology" at the Center of Molecu…☆207Updated last year
- Cell tracking and segmentation software☆114Updated last week
- A napari plugin for clustering objects according to their properties.☆85Updated this week
- Image reading, metadata management, and image writing for Microscopy images in Python☆86Updated this week
- This is the repository for a Python bioimage analysis course which establishes the fundamentals of image analysis in the context of biolo…☆134Updated 5 years ago
- Creating figures and animations for multi-channel images with a focus on microscopy.☆76Updated 5 months ago
- Track cells and build cell lineages☆34Updated 9 months ago
- Nanoscopy library for Python (NanoPyx, the successor to NanoJ) - focused on light microscopy and super-resolution imaging☆81Updated this week
- Accelerated Pixel and Object Classifiers (APOC)☆57Updated 2 months ago
- Read and write ImageJ ROI format.☆72Updated this week
- A tool for cell instance aware segmentation in densely packed 3D volumetric images☆111Updated last week
- Collection of tools and scripts useful to automate microscopy workflows in ZEN Blue using Python and Open Application Development tools a…☆135Updated last week
- An ImageJ/Fiji plugin designed to effortlessly integrate Segment-Anything models (SAMs) without code.☆65Updated last month
- Implementation of next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.☆189Updated last week
- ☆71Updated last month
- The ImageJ plugin to run deep-learning models☆92Updated last week
- BIA Bob is a Jupyter+LLM-based assistant for interacting with image data and for working on Bio-image Analysis tasks.☆113Updated last month
- Read and write life sciences file formats☆139Updated 8 months ago
- Cookiecutter for napari plugins☆69Updated 6 months ago
- ☆70Updated this week
- Deep-learning based semantic and instance segmentation for 3D Electron Microscopy and other bioimage analysis problems based on pytorch.☆94Updated this week
- StarDist plugin for napari☆38Updated 8 months ago
- Image restoration for fluorescence microscopy☆305Updated 7 months ago