CamachoDejay / teaching-bioimage-analysis-pythonLinks
A place to collect information used in lectures, demos, workshops, etc.
☆17Updated last year
Alternatives and similar repositories for teaching-bioimage-analysis-python
Users that are interested in teaching-bioimage-analysis-python are comparing it to the libraries listed below
Sorting:
- A short course exploring several fun and useful notebooks and Napari widgets for deep learning with SAM, Cellpose, Stardist and friends.☆19Updated last month
- FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets☆29Updated last week
- ☆15Updated 2 weeks ago
- ☆51Updated 9 months ago
- A minimal dependency napari plugin giving access to scikit-image functions☆23Updated 5 months ago
- This repository hosts notebooks, information and data for the Quantitative Bio-Image Analysis with Python Course 2022.☆16Updated 3 years ago
- A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…☆30Updated 9 months ago
- Browse your OMERO database from within napari.☆40Updated 3 weeks ago
- ☆12Updated 5 months ago
- "Defragmentation: bringing BioImage Analysts to the cloud!” training school for the new generation of bioimage analysts. Topics: workflow…☆15Updated 2 years ago
- ☆13Updated 2 months ago
- PoL Bioimage Analysis Training School: GPU-Accelerated Image Analysis Track☆28Updated last year
- An automated point-set based registration algorithm for correlative light and electron microscopy (CLEM)☆21Updated 3 months ago
- ZELDA: a 3D Image Segmentation and Parent to Child relation plugin for microscopy image analysis in napari☆25Updated 2 months ago
- Computational workflows to assess phototoxicity in live-cell microscopy experiments☆11Updated 4 months ago
- A toolbox for registering / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.☆102Updated this week
- Feature extraction for labeled objects in images using regionprops from scikit-image☆55Updated 9 months ago
- ☆20Updated 3 weeks ago
- Ngio is a Python library to streamline OME-Zarr image analysis workflows.☆37Updated last week
- some useful function to get Label from ROIs and vice versa , and more!☆11Updated 2 years ago
- A nextflow based tool that wraps bfconvert and bioformats2raw to convert image data collections to OME-TIFF and OME-Zarr, respectively, i…☆25Updated 10 months ago
- Guides and code for 3D nuclear instance segmentation☆22Updated 2 months ago
- ☆16Updated 2 years ago
- Multiple file format reading directly into napari using pure Python☆39Updated 3 months ago
- "Defragmentation TS2: bringing BioImage Analysts to the cloud!” training school for the new generation of bioimage analysts. Topics: work…☆10Updated 2 years ago
- A module with convenience functions for writing Python code that interacts with OMERO.☆46Updated 2 months ago
- A napari plugin to view and edit metadata☆13Updated last week
- A napari plugin for stitching large multi-positioning datasets in 2/3D+t using multiview-stitcher☆17Updated 6 months ago
- python tools for BigDataViewer☆22Updated last year
- Fast4DReg is a Fiji script for quick drift correction in time-lapse 3D-stacks. The script can be used to correct drift in all x-, y- and/…☆40Updated 9 months ago