CamachoDejay / teaching-bioimage-analysis-python
A place to collect information used in lectures, demos, workshops, etc.
☆17Updated 4 months ago
Alternatives and similar repositories for teaching-bioimage-analysis-python:
Users that are interested in teaching-bioimage-analysis-python are comparing it to the libraries listed below
- A short course exploring several fun and useful notebooks and Napari widgets for deep learning with SAM, Cellpose, Stardist and friends.☆12Updated 2 months ago
- ☆15Updated 2 years ago
- ☆22Updated 4 months ago
- A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…☆25Updated 2 months ago
- some useful function to get Label from ROIs and vice versa , and more!☆12Updated last year
- "Defragmentation: bringing BioImage Analysts to the cloud!” training school for the new generation of bioimage analysts. Topics: workflow…☆15Updated last year
- ZELDA: a 3D Image Segmentation and Parent to Child relation plugin for microscopy image analysis in napari☆20Updated 2 months ago
- Imagej toolset to ease hyperstacks visualization and handling☆22Updated 3 months ago
- This repository hosts notebooks, information and data for the Quantitative Bio-Image Analysis with Python Course 2022.☆15Updated 2 years ago
- Napari plugin for vollseg☆13Updated 8 months ago
- ☆45Updated 3 months ago
- Visualizing feature measurements on label images in napari☆10Updated 6 months ago
- PoL Bioimage Analysis Training School: GPU-Accelerated Image Analysis Track☆25Updated 7 months ago
- An automated point-set based registration algorithm for correlative light and electron microscopy (CLEM)☆16Updated last week
- FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets☆28Updated this week
- ☆10Updated 5 months ago
- ☆15Updated 2 weeks ago
- ☆14Updated last year
- A Board Game to teach co-localization analysis☆12Updated 2 months ago
- "Defragmentation TS2: bringing BioImage Analysts to the cloud!” training school for the new generation of bioimage analysts. Topics: work…☆10Updated last year
- BIOMERO - A python library for easy connecting between OMERO (jobs) and a Slurm cluster☆14Updated this week
- Napari Visualization tool for Trackmate > 6.0 and bTrackmate XML files for 2/3D + time tracks. Available via pip package napatrackmater.☆16Updated last month
- Multiple file format reading directly into napari using pure Python☆35Updated 6 months ago
- A minimal dependency napari plugin giving access to scikit-image functions☆17Updated 4 months ago
- Optimize image processing workflows in napari☆17Updated 2 years ago
- This repository contains the materials for the University of Oxford DTC ONBI Image Analysis course☆18Updated 7 years ago
- A collection of demonstration materials for MorphoLibJ.☆12Updated 2 years ago
- ☆12Updated 8 months ago
- ☆20Updated last year
- A napari plugin for stitching large multi-positioning datasets in 2/3D+t using multiview-stitcher☆15Updated last month