A place to collect information used in lectures, demos, workshops, etc.
☆17Sep 26, 2024Updated 2 years ago
Alternatives and similar repositories for teaching-bioimage-analysis-python
Users that are interested in teaching-bioimage-analysis-python are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A first intoduction to scripting in Fiji using the ImageJ Macro language.☆27Sep 26, 2024Updated 2 years ago
- A platform for compiling, analyzing, and exploring tracking data☆51Oct 22, 2026Updated last week
- Imagej toolset to ease hyperstacks visualization and handling☆23Feb 9, 2026Updated 8 months ago
- A napari plugin for stitching large multi-positioning datasets in 2/3D+t using multiview-stitcher☆19Jul 26, 2026Updated 3 months ago
- Napari training material for a workshop by the CZI funded initiatives LIBRE hub, Napari, and several amazing volunteers☆10Sep 28, 2023Updated 3 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- napari plugin for trackastra☆19Jul 16, 2026Updated 3 months ago
- ☆13Mar 26, 2025Updated last year
- Python tools for MoBIE☆10Jul 3, 2026Updated 3 months ago
- PoL Bioimage Analysis Training School: GPU-Accelerated Image Analysis Track☆28Jun 5, 2024Updated 2 years ago
- This is the repository for a Python bioimage analysis course which establishes the fundamentals of image analysis in the context of biolo…☆137Apr 9, 2020Updated 6 years ago
- Teaching materials and outline for the Pasteur Bioimage Analysis vour☆17Jun 2, 2025Updated last year
- ☆53May 1, 2025Updated last year
- ☆45Oct 20, 2026Updated last week
- Materials for the advanced image registration section of the "Advanced methods in bioimage analysis" EMBO 2023 course☆10Sep 15, 2023Updated 3 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Fluorescence Lifetime Ultimate Explorer (FLUTE) is a GUI for exploring and analyzing Fluorescence Lifetime Microscopy (FLIM) data☆32Nov 17, 2025Updated 11 months ago
- ☆13May 12, 2026Updated 5 months ago
- Training resources for Students at Uni Leipzig who want to dive into bio-image data science with Python. The material will develop betwee…☆39Jul 9, 2024Updated 2 years ago
- A collection of Image Processing and Analysis (IPA) functions used at the Facility for Advanced Imaging and Microscopy (FAIM)☆20Updated this week
- A self-explanatory, hands-on intro to bioimage analysis in python. Slightly outdated but still much liked by learners.☆102Feb 17, 2023Updated 3 years ago
- Tiled processing of arbitrarily large images — any image, any function.☆18Oct 22, 2026Updated last week
- Guides and code for 3D nuclear instance segmentation☆25Dec 2, 2025Updated 10 months ago
- Resources for teaching/preparing to teach bioimage analysis☆65Oct 16, 2026Updated last week
- ☆12May 26, 2026Updated 5 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- SplineDist: Automated Cell Segmentation with Spline Curves☆74Sep 29, 2024Updated 2 years ago
- Materials for the "ImageJ/Fiji Level 2: Automation and batch processing using macros" course taught at the Wolfson Bioimaging Facility, U…☆13Jan 24, 2022Updated 4 years ago
- An ImageJ/Fiji plugin designed to effortlessly integrate Segment-Anything models (SAMs) without code.☆103Oct 13, 2026Updated 2 weeks ago
- SciCount is tool focused on counting and classifying of objects in image-like data and scientific images, with training and example datas…☆11Oct 24, 2023Updated 3 years ago
- Efficient graph data structures and algorithms for fast slicing, visualization, and editing☆13Jul 1, 2026Updated 3 months ago
- ImageJ macros and scripts written at the imaging facility MRI☆45Oct 16, 2026Updated last week
- ☆22May 12, 2021Updated 5 years ago
- GPU-accelerated Image Processing library for Python☆65Oct 22, 2026Updated last week
- ☆27Sep 11, 2026Updated last month
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- [OBSOLETE] A collection of plugins related to the cell/nucleus tracking, motivated by the Cell Tracking Challenge.☆10Jan 11, 2022Updated 4 years ago
- Course and exercises on deep learning for microscopy image analysis☆24Jul 9, 2026Updated 3 months ago
- GPU-accelerated Image Processing library for C++☆16Oct 15, 2026Updated last week
- Interactive image stack viewing in jupyter notebooks based on ipycanvas and ipywidgets☆184Jul 30, 2026Updated 2 months ago
- The known BioVoxxel Toolbox functions now improved for 2D and 3D images☆21Oct 16, 2026Updated last week
- The Java library to run Deep Learning models☆37Updated this week
- A short course exploring several fun and useful notebooks and Napari widgets for deep learning with SAM, Cellpose, Stardist and friends.☆19Dec 9, 2025Updated 10 months ago