Sentinal4D / cellshapeLinks
3D shape analysis using deep learning
☆28Updated 3 weeks ago
Alternatives and similar repositories for cellshape
Users that are interested in cellshape are comparing it to the libraries listed below
Sorting:
- A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…☆29Updated 5 months ago
- Python-based Human-In-the-LOop Workflow: PHILOW is an interactive deep learning-based platform for 3D datasets☆27Updated 8 months ago
- Accelerated Pixel and Object Classifiers (APOC)☆58Updated 3 months ago
- Process and analyze surfaces using vedo in napari.☆24Updated last year
- Benchmarking Large Language Models for Bio-Image Analysis Code Generation☆23Updated 11 months ago
- ☆23Updated 4 months ago
- StarDist plugin for napari☆39Updated last year
- FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets☆30Updated last week
- MultiModal Big Image Data Sharing and Exploration☆17Updated 2 years ago
- dask empowered fast4dreg☆15Updated 11 months ago
- ☆47Updated last week
- ☆33Updated 5 months ago
- Optimize image processing workflows in napari☆18Updated 5 months ago
- An automated point-set based registration algorithm for correlative light and electron microscopy (CLEM)☆19Updated this week
- Python libraries for loading, running and packaging bioimage.io models☆33Updated this week
- ZELDA: a 3D Image Segmentation and Parent to Child relation plugin for microscopy image analysis in napari☆20Updated 11 months ago
- Napari Visualization tool for Trackmate > 6.0 XML files for 2/3D + time tracks. Available via pip package napatrackmater.☆17Updated 3 weeks ago
- Utils and convenience functions for large-scale bio-image analysis.☆58Updated 2 months ago
- ☆21Updated last year
- GPU-accelerated Image Processing library for Python☆51Updated this week
- A template repo used to make new napari plugins☆27Updated this week
- GPU-accelerated general purpose image processing and image analysis in napari☆35Updated 5 months ago
- ☆37Updated 2 months ago
- This repository hosts notebooks, information and data for the Quantitative Bio-Image Analysis with Python Course 2022.☆16Updated 2 years ago
- python tools for BigDataViewer☆22Updated 9 months ago
- GPU-accelerated, OpenCL-based Random Forest Classifiers for pixel and labeled object classification in napari.☆45Updated 5 months ago
- Transformer-based cell tracking for live-cell microscopy☆103Updated last week
- ☆13Updated 5 years ago
- Resources for teaching/preparing to teach bioimage analysis☆58Updated 2 weeks ago
- napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool☆59Updated last year