Alternatives and similar repositories for cellshape

Users that are interested in cellshape are comparing it to the libraries listed below

• haesleinhuepf / napari-segment-blobs-and-things-with-membranes
  A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…
  ☆29Updated 5 months ago
• neurobiology-ut / PHILOW
  Python-based Human-In-the-LOop Workflow: PHILOW is an interactive deep learning-based platform for 3D datasets
  ☆27Updated 8 months ago
• haesleinhuepf / apoc
  Accelerated Pixel and Object Classifiers (APOC)
  ☆58Updated 3 months ago
• haesleinhuepf / napari-process-points-and-surfaces
  Process and analyze surfaces using vedo in napari.
  ☆24Updated last year
• haesleinhuepf / human-eval-bia
  Benchmarking Large Language Models for Bio-Image Analysis Code Generation
  ☆23Updated 11 months ago
• fractal-napari-plugins-collection / napari-feature-classifier
  ☆23Updated 4 months ago
• stardist / stardist-napari
  StarDist plugin for napari
  ☆39Updated last year
• ekatrukha / BigTrace
  FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets
  ☆30Updated last week
• mobie / mobie
  MultiModal Big Image Data Sharing and Exploration
  ☆17Updated 2 years ago
• COSC-Lab / napari-fast4dreg
  dask empowered fast4dreg
  ☆15Updated 11 months ago
• abcucberkeley / PetaKit5D
  ☆47Updated last week
• haesleinhuepf / napari-assistant
  ☆33Updated 5 months ago
• haesleinhuepf / napari-workflow-optimizer
  Optimize image processing workflows in napari
  ☆18Updated 5 months ago
• krentzd / napari-clemreg
  An automated point-set based registration algorithm for correlative light and electron microscopy (CLEM)
  ☆19Updated this week
• bioimage-io / core-bioimage-io-python
  Python libraries for loading, running and packaging bioimage.io models
  ☆33Updated this week
• RoccoDAnt / napari-zelda
  ZELDA: a 3D Image Segmentation and Parent to Child relation plugin for microscopy image analysis in napari
  ☆20Updated 11 months ago
• Kapoorlabs-CAPED / NapaTrackMater
  Napari Visualization tool for Trackmate > 6.0 XML files for 2/3D + time tracks. Available via pip package napatrackmater.
  ☆17Updated 3 weeks ago
• constantinpape / elf
  Utils and convenience functions for large-scale bio-image analysis.
  ☆58Updated 2 months ago
• baigouy / EPySeg
  ☆21Updated last year
• clEsperanto / pyclesperanto
  GPU-accelerated Image Processing library for Python
  ☆51Updated this week
• napari / napari-plugin-template
  A template repo used to make new napari plugins
  ☆27Updated this week
• clEsperanto / napari_pyclesperanto_assistant
  GPU-accelerated general purpose image processing and image analysis in napari
  ☆35Updated 5 months ago
• bauerdavid / napari-nD-annotator
  ☆37Updated 2 months ago
• BiAPoL / Quantitative_Bio_Image_Analysis_with_Python_2022
  This repository hosts notebooks, information and data for the Quantitative Bio-Image Analysis with Python Course 2022.
  ☆16Updated 2 years ago
• constantinpape / pybdv
  python tools for BigDataViewer
  ☆22Updated 9 months ago
• haesleinhuepf / napari-accelerated-pixel-and-object-classification
  GPU-accelerated, OpenCL-based Random Forest Classifiers for pixel and labeled object classification in napari.
  ☆45Updated 5 months ago
• weigertlab / trackastra
  Transformer-based cell tracking for live-cell microscopy
  ☆103Updated last week
• miura / NEUBIAS_AnalystSchool2020
  ☆13Updated 5 years ago
• NEUBIAS / training-resources
  Resources for teaching/preparing to teach bioimage analysis
  ☆58Updated 2 weeks ago
• MouseLand / cellpose-napari
  napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool
  ☆59Updated last year