3D shape analysis using deep learning
☆31Oct 8, 2025Updated 5 months ago
Alternatives and similar repositories for cellshape
Users that are interested in cellshape are comparing it to the libraries listed below
Sorting:
- Use Napari Viewer to display CZI images☆11May 25, 2022Updated 3 years ago
- ☆14Jan 25, 2024Updated 2 years ago
- Accelerated Pixel and Object Classifiers (APOC)☆61Jul 18, 2025Updated 8 months ago
- ilastik plugin for napari☆14Mar 2, 2026Updated 2 weeks ago
- A napari plugin for stitching large multi-positioning datasets in 2/3D+t using multiview-stitcher☆17Mar 4, 2026Updated 2 weeks ago
- How to use Aligning Big Brains and Atlases with Python☆14May 3, 2023Updated 2 years ago
- A minimalistic napari plugin to create and save regions of interest and annotations on series of images☆18Apr 8, 2025Updated 11 months ago
- A stable diffusion demo for napari☆11Dec 15, 2023Updated 2 years ago
- GPU-accelerated, OpenCL-based Random Forest Classifiers for pixel and labeled object classification in napari.☆45May 1, 2025Updated 10 months ago
- This repository hosts notebooks, information and data for the Quantitative Bio-Image Analysis with Python Course 2022.☆17Nov 10, 2022Updated 3 years ago
- ☆15Jul 29, 2022Updated 3 years ago
- Efficient graph data structures and algorithms for fast slicing, visualization, and editing☆13Dec 1, 2025Updated 3 months ago
- GPU-accelerated Image Processing library for Python☆54Mar 13, 2026Updated last week
- A plugin to read whole slide images within napari.☆21Nov 24, 2025Updated 3 months ago
- Dataset EXploration & Processing☆33May 11, 2023Updated 2 years ago
- FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets☆29Mar 11, 2026Updated last week
- Denoising via adaptive binning.☆13Jan 6, 2026Updated 2 months ago
- A collection of Image Processing and Analysis (IPA) functions used at the Facility for Advanced Imaging and Microscopy (FAIM)☆20Updated this week
- Process and analyze surfaces using vedo in napari.☆25May 13, 2024Updated last year
- SplineDist: Automated Cell Segmentation with Spline Curves☆72Sep 29, 2024Updated last year
- A Python toolbox for registering / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.☆107Mar 9, 2026Updated last week
- Linking napari layers with Matplotlib plots☆43Mar 1, 2026Updated 2 weeks ago
- A module with convenience functions for writing Python code that interacts with OMERO.☆46Dec 4, 2025Updated 3 months ago
- A napari plugin for making image annotation using feature space of vision transformers and Random Forest classifier☆21Nov 24, 2025Updated 3 months ago
- Script that registers Histology slices to volumetric image data☆11Oct 4, 2023Updated 2 years ago
- ☆13Apr 27, 2020Updated 5 years ago
- Python package for deep learning based image to image transformation☆53Mar 12, 2026Updated last week
- ☆23Jun 27, 2025Updated 8 months ago
- Fast4DReg is a Fiji script for quick drift correction in time-lapse 3D-stacks. The script can be used to correct drift in all x-, y- and/…☆40Apr 21, 2025Updated 10 months ago
- A napari plugin for clustering objects according to their properties.☆90Mar 9, 2026Updated last week
- ☆24Feb 12, 2026Updated last month
- ZELDA: a 3D Image Segmentation and Parent to Child relation plugin for microscopy image analysis in napari☆25Nov 25, 2025Updated 3 months ago
- Generate multifunctional and macro recordable GUIs from Python classes☆45Mar 5, 2026Updated 2 weeks ago
- SciCount is tool focused on counting and classifying of objects in image-like data and scientific images, with training and example datas…☆11Oct 24, 2023Updated 2 years ago
- A short course exploring several fun and useful notebooks and Napari widgets for deep learning with SAM, Cellpose, Stardist and friends.☆19Dec 9, 2025Updated 3 months ago
- MethodsJ2☆14May 6, 2022Updated 3 years ago
- We trained high performing open source models on image scans of tissue biopsies to predict endoscopic categories in inflammatory bowel di…☆16Mar 3, 2023Updated 3 years ago
- A minimal dependency napari plugin giving access to scikit-image functions☆23Sep 3, 2025Updated 6 months ago
- Napari Visualization tool for Trackmate > 6.0 XML files for 2/3D + time tracks. Available via pip package napatrackmater.☆18Oct 8, 2025Updated 5 months ago