Alternatives and similar repositories for bigdataprocessor2:

Users that are interested in bigdataprocessor2 are comparing it to the libraries listed below

• nvladimus / npy2bdv
  Fast writing of numpy 3d-arrays into HDF5 Fiji/BigDataViewer files.
  ☆35Updated 5 months ago
• BIOP / EasyXT-FIJI
  Commands and Classes for interfacing between Imaris and Fiji
  ☆12Updated 4 months ago
• constantinpape / pybdv
  python tools for BigDataViewer
  ☆21Updated last month
• haesleinhuepf / napari-simpleitk-image-processing
  Process images using SimpleITK in napari
  ☆20Updated 4 months ago
• aeisenbarth / ngff-writer
  A writer and reader for NGFF OME-Zarr datasets
  ☆14Updated 3 years ago
• imagej / napari-imagej
  Use ImageJ functionality from napari
  ☆26Updated 2 weeks ago
• ome / napari-ome-zarr
  A napari plugin for zarr backed OME-NGFF images
  ☆32Updated this week
• JaneliaSciComp / pydantic-ome-ngff
  Pydantic models for OME-NGFF
  ☆22Updated this week
• stardist / stardist-napari
  StarDist plugin for napari
  ☆37Updated 5 months ago
• ome / ome2024-ngff-challenge
  Project planning and material repository for the 2024 challenge to generate 1 PB of OME-Zarr data
  ☆19Updated 2 weeks ago
• tlambert03 / imarispy
  Python package for writing 5D numpy arrays to HDF5 files readable by both Imaris and BigDataViewer
  ☆12Updated 3 years ago
• lacan / microscopy-icons
  Icons describing multiple microscopy techniques, as used by https://www.epfl.ch/research/facilities/ptbiop/equipment/
  ☆11Updated last year
• BIOP / ijp-LaRoMe
  some useful function to get Label from ROIs and vice versa , and more!
  ☆12Updated last year
• cmongis / psfj
  PSFj - Know your microscope fluorescence
  ☆21Updated 4 years ago
• multiview-stitcher / multiview-stitcher
  A toolbox for registering / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.
  ☆61Updated this week
• imaris / ImarisWriter
  ☆34Updated 9 months ago
• napari-threedee / napari-threedee
  A 3D interactivity toolbox for napari
  ☆32Updated 2 months ago
• morphometrics / morphometrics
  ☆20Updated last year
• m-albert / MVRegFus
  Python module for registering and fusing multi-view microscopy data
  ☆23Updated last year
• saalfeldlab / n5-ij
  ImageJ convenience layer for N5
  ☆16Updated this week
• rosalindfranklininstitute / RedLionfish
  ☆29Updated 10 months ago
• Euro-BioImaging / BatchConvert
  A nextflow based tool that wraps bfconvert and bioformats2raw to convert image data collections to OME-TIFF and OME-Zarr, respectively, i…
  ☆20Updated last month
• sofroniewn / napari-training-course
  Lectures for a napari training course
  ☆50Updated last year
• haesleinhuepf / imagejmacromarkdown
  Generate markdown notebooks from ImageJ Macro
  ☆24Updated 3 years ago
• haesleinhuepf / napari-accelerated-pixel-and-object-classification
  GPU-accelerated, OpenCL-based Random Forest Classifiers for pixel and labeled object classification in napari.
  ☆43Updated last year
• haesleinhuepf / devbio-napari
  ☆46Updated 3 months ago
• jluethi / napari-feature-visualization
  Visualizing feature measurements on label images in napari
  ☆10Updated 6 months ago
• haesleinhuepf / napari-plot-profile
  ☆17Updated 2 years ago
• czbiohub-sf / iohub
  Pythonic and parallelizable I/O for N-dimensional imaging data with OME metadata
  ☆34Updated last week