Alternatives and similar repositories for bigdataprocessor2

Users that are interested in bigdataprocessor2 are comparing it to the libraries listed below

• nvladimus / npy2bdv
  Fast writing of numpy 3d-arrays into HDF5 Fiji/BigDataViewer files.
  ☆35Updated 11 months ago
• hanjinliu / napari-filaments
  A napari plugin for filament analysis
  ☆9Updated last year
• JaneliaSciComp / pydantic-ome-ngff
  Pydantic models for OME-NGFF
  ☆24Updated last week
• ome / napari-ome-zarr
  A napari plugin for zarr backed OME-NGFF images
  ☆33Updated this week
• tlambert03 / imarispy
  Python package for writing 5D numpy arrays to HDF5 files readable by both Imaris and BigDataViewer
  ☆12Updated 3 years ago
• aeisenbarth / ngff-writer
  A writer and reader for NGFF OME-Zarr datasets
  ☆14Updated 3 years ago
• napari-threedee / napari-threedee
  A 3D interactivity toolbox for napari
  ☆37Updated last month
• Euro-BioImaging / BatchConvert
  A nextflow based tool that wraps bfconvert and bioformats2raw to convert image data collections to OME-TIFF and OME-Zarr, respectively, i…
  ☆23Updated 4 months ago
• rosalindfranklininstitute / RedLionfish
  ☆31Updated last year
• cmongis / psfj
  PSFj - Know your microscope fluorescence
  ☆21Updated 5 years ago
• BIOP / EasyXT-FIJI
  Commands and Classes for interfacing between Imaris and Fiji
  ☆12Updated 10 months ago
• czbiohub-sf / iohub
  Pythonic and parallelizable I/O for N-dimensional imaging data with OME metadata
  ☆39Updated last week
• haesleinhuepf / napari-simpleitk-image-processing
  Process images using SimpleITK in napari
  ☆21Updated 3 months ago
• imagej / napari-imagej
  Use ImageJ functionality from napari
  ☆31Updated 2 weeks ago
• hinderling / napari_pixel_classifier
  An Ilastik-like interactive pixel classifier.
  ☆16Updated 11 months ago
• stardist / stardist-napari
  StarDist plugin for napari
  ☆40Updated 11 months ago
• sofroniewn / napari-training-course
  Lectures for a napari training course
  ☆50Updated last year
• saalfeldlab / n5-ij
  ImageJ convenience layer for N5
  ☆17Updated last week
• mobie / mobie-viewer-fiji
  ☆37Updated this week
• allen-cell-animated / agave
  ☆49Updated this week
• MicroscopeAutoPilot / autopilot
  AutoPilot library
  ☆14Updated 8 years ago
• guiwitz / naparimovie
  Create movies from series of key-frames in napari.
  ☆38Updated 4 years ago
• clij / clij-docs
  Online documentation and reference for CLIJ
  ☆28Updated 4 years ago
• morphometrics / morphometrics
  ☆22Updated last year
• imaris / ImarisWriter
  ☆37Updated last year
• constantinpape / pybdv
  python tools for BigDataViewer
  ☆22Updated 7 months ago
• chanzuckerberg / napari-hub
  Discover, install, and share napari plugins
  ☆52Updated last month
• multiview-stitcher / multiview-stitcher
  A toolbox for registering / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.
  ☆78Updated last month
• haesleinhuepf / apoc
  Accelerated Pixel and Object Classifiers (APOC)
  ☆56Updated 3 weeks ago
• haesleinhuepf / napari-accelerated-pixel-and-object-classification
  GPU-accelerated, OpenCL-based Random Forest Classifiers for pixel and labeled object classification in napari.
  ☆43Updated 3 months ago