bigdataprocessor / bigdataprocessor2Links
☆23Updated 2 months ago
Alternatives and similar repositories for bigdataprocessor2
Users that are interested in bigdataprocessor2 are comparing it to the libraries listed below
Sorting:
- Fast writing of numpy 3d-arrays into HDF5 Fiji/BigDataViewer files.☆34Updated last year
- Python package for writing 5D numpy arrays to HDF5 files readable by both Imaris and BigDataViewer☆12Updated 4 years ago
- A Beginner's guide to microscopy, from sample prep to acquisition, image analysis, and data interpretation☆29Updated 3 weeks ago
- PSFj - Know your microscope fluorescence☆23Updated 5 years ago
- A 3D interactivity toolbox for napari☆37Updated 5 months ago
- Pydantic models for OME-NGFF☆24Updated 2 months ago
- Process images using SimpleITK in napari☆23Updated 7 months ago
- ☆22Updated 2 years ago
- A writer and reader for NGFF OME-Zarr datasets☆14Updated 4 years ago
- A nextflow based tool that wraps bfconvert and bioformats2raw to convert image data collections to OME-TIFF and OME-Zarr, respectively, i…☆24Updated 8 months ago
- A napari plugin for zarr backed OME-NGFF images☆42Updated last week
- Lectures for a napari training course☆51Updated 2 years ago
- Use ImageJ functionality from napari☆32Updated 2 months ago
- Commands and Classes for interfacing between Imaris and Fiji☆13Updated last year
- Pythonic and parallelizable I/O for N-dimensional imaging data with OME metadata☆44Updated this week
- python tools for BigDataViewer☆22Updated 11 months ago
- StarDist plugin for napari☆38Updated last year
- ☆36Updated last year
- some useful function to get Label from ROIs and vice versa , and more!☆11Updated 2 years ago
- Create movies from series of key-frames in napari.☆38Updated 4 years ago
- ☆38Updated last year
- Python module for registering and fusing multi-view microscopy data☆24Updated 9 months ago
- A toolbox for registering / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.☆95Updated this week
- MultiModal Big Image Data Sharing and Exploration☆18Updated 2 years ago
- ImageJ convenience layer for N5☆19Updated 3 weeks ago
- Discover, install, and share napari plugins☆54Updated last month
- ☆41Updated this week
- An Ilastik-like interactive pixel classifier.☆16Updated last year
- napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool☆61Updated last year
- native Python dataclasses for the OME data model☆64Updated last week