bigdataprocessor / bigdataprocessor2

Related projects: ⓘ

• nvladimus / npy2bdv
  Fast writing of numpy 3d-arrays into HDF5 Fiji/BigDataViewer files.
  ☆34Updated 3 weeks ago
• haesleinhuepf / napari-simpleitk-image-processing
  Process images using SimpleITK in napari
  ☆19Updated 2 weeks ago
• saalfeldlab / n5-ij
  ImageJ convenience layer for N5
  ☆14Updated 2 weeks ago
• imagej / napari-imagej
  Use ImageJ functionality from napari
  ☆25Updated last month
• constantinpape / pybdv
  python tools for BigDataViewer
  ☆21Updated last year
• BIOP / EasyXT-FIJI
  Commands and Classes for interfacing between Imaris and Fiji
  ☆12Updated 3 months ago
• lacan / microscopy-icons
  Icons describing multiple microscopy techniques, as used by https://www.epfl.ch/research/facilities/ptbiop/equipment/
  ☆11Updated last year
• imaris / ImarisWriter
  ☆29Updated 4 months ago
• tlambert03 / imarispy
  Python package for writing 5D numpy arrays to HDF5 files readable by both Imaris and BigDataViewer
  ☆11Updated 3 years ago
• napari-threedee / napari-threedee
  A 3D interactivity toolbox for napari
  ☆32Updated last month
• JaneliaSciComp / pydantic-ome-ngff
  Pydantic models for OME-NGFF
  ☆20Updated this week
• morphometrics / morphometrics
  ☆19Updated last year
• cmongis / psfj
  PSFj - Know your microscope fluorescence
  ☆19Updated 4 years ago
• ome / napari-ome-zarr
  A napari plugin for zarr backed OME-NGFF images
  ☆27Updated 3 weeks ago
• RoccoDAnt / napari-zelda
  ZELDA: a 3D Image Segmentation and Parent to Child relation plugin for microscopy image analysis in napari
  ☆19Updated last month
• multiview-stitcher / multiview-stitcher
  A toolbox for registering / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.
  ☆44Updated this week
• abcucberkeley / PetaKit5D
  ☆20Updated last week
• BIOP / ijp-LaRoMe
  some useful function to get Label from ROIs and vice versa , and more!
  ☆12Updated last year
• miura / NEUBIAS_AnalystSchool2020
  ☆13Updated 4 years ago
• jluethi / napari-feature-visualization
  Visualizing feature measurements on label images in napari
  ☆10Updated last month
• haesleinhuepf / the-segmentation-game
  Gamified image segmentation quality estimation
  ☆17Updated last year
• m-albert / MVRegFus
  Python module for registering and fusing multi-view microscopy data
  ☆23Updated 11 months ago
• haesleinhuepf / napari-process-points-and-surfaces
  Process and analyze surfaces using vedo in napari.
  ☆21Updated 4 months ago
• tlambert03 / napari-ndtiffs
  A napari plugin to load & deskew folders of lattice light sheet TIFFs
  ☆12Updated 2 weeks ago
• bioio-devs / bioio
  Image reading, metadata management, and image writing for Microscopy images in Python
  ☆33Updated this week
• JaneliaSciComp / BigStitcher-Spark
  Running compute-intense parts of BigStitcher distributed
  ☆17Updated last week
• czbiohub-sf / iohub
  Pythonic and parallelizable I/O for N-dimensional imaging data with OME metadata
  ☆29Updated this week
• sebi06 / napari_zeiss
  Use Napari Viewer to display CZI images
  ☆10Updated 2 years ago
• aeisenbarth / ngff-writer
  A writer and reader for NGFF OME-Zarr datasets
  ☆14Updated 2 years ago
• royerlab / dexp
  Dataset EXploration & Processing
  ☆29Updated last year