bigdataprocessor / bigdataprocessor2
☆20Updated 3 months ago
Alternatives and similar repositories for bigdataprocessor2:
Users that are interested in bigdataprocessor2 are comparing it to the libraries listed below
- Fast writing of numpy 3d-arrays into HDF5 Fiji/BigDataViewer files.☆35Updated 8 months ago
- Process images using SimpleITK in napari☆20Updated this week
- Commands and Classes for interfacing between Imaris and Fiji☆12Updated 7 months ago
- Pydantic models for OME-NGFF☆23Updated last week
- PSFj - Know your microscope fluorescence☆21Updated 5 years ago
- python tools for BigDataViewer☆22Updated 4 months ago
- A napari plugin for filament analysis☆9Updated last year
- Icons describing multiple microscopy techniques, as used by https://www.epfl.ch/research/facilities/ptbiop/equipment/☆11Updated 2 years ago
- A napari plugin for zarr backed OME-NGFF images☆33Updated last month
- ☆20Updated last year
- A nextflow based tool that wraps bfconvert and bioformats2raw to convert image data collections to OME-TIFF and OME-Zarr, respectively, i…☆22Updated last month
- Python module for registering and fusing multi-view microscopy data☆23Updated last month
- ImageJ convenience layer for N5☆17Updated last month
- Python package for writing 5D numpy arrays to HDF5 files readable by both Imaris and BigDataViewer☆12Updated 3 years ago
- Gamified image segmentation quality estimation☆17Updated this week
- A 3D interactivity toolbox for napari☆34Updated 2 weeks ago
- A Fiji/ImageJ plugin to generate ROIs from label images, allowing ROI erosion and quantification☆23Updated 3 years ago
- Dataset EXploration & Processing☆32Updated last year
- Project planning and material repository for the 2024 challenge to generate 1 PB of OME-Zarr data☆19Updated 3 weeks ago
- ☆29Updated last year
- A writer and reader for NGFF OME-Zarr datasets☆14Updated 3 years ago
- Online documentation and reference for CLIJ☆28Updated 3 years ago
- Create movies from series of key-frames in napari.☆38Updated 3 years ago
- A template repo used to make new napari plugins☆20Updated last week
- some useful function to get Label from ROIs and vice versa , and more!☆12Updated 2 years ago
- Pythonic and parallelizable I/O for N-dimensional imaging data with OME metadata☆35Updated 2 weeks ago
- Visualizing feature measurements on label images in napari☆10Updated 9 months ago
- Process and analyze surfaces using vedo in napari.☆23Updated 11 months ago
- ZELDA: a 3D Image Segmentation and Parent to Child relation plugin for microscopy image analysis in napari☆20Updated 5 months ago
- Archived: control, reconstruction, and analysis code for oblique plane microscopy.☆22Updated last month