FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets
☆30Apr 23, 2026Updated last month
Alternatives and similar repositories for BigTrace
Users that are interested in BigTrace are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A napari plugin for stitching large multi-positioning datasets in 2/3D+t using multiview-stitcher☆19Apr 20, 2026Updated last month
- MultiModal Big Image Data Sharing and Exploration☆20Jan 13, 2023Updated 3 years ago
- Icons describing multiple microscopy techniques, as used by https://www.epfl.ch/research/facilities/ptbiop/equipment/☆11Mar 13, 2023Updated 3 years ago
- Deep Learning segmentation suite designed for 2D microscopy image segmentation☆10Dec 17, 2021Updated 4 years ago
- python tools for BigDataViewer☆23Dec 29, 2024Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A minimalistic napari plugin to create and save regions of interest and annotations on series of images☆19Apr 8, 2025Updated last year
- Efficient graph data structures and algorithms for fast slicing, visualization, and editing☆13May 12, 2026Updated 2 weeks ago
- 4D reconstruction of developmental trajectories using spherical harmonics☆23Mar 25, 2025Updated last year
- Denoising via adaptive binning.☆13Jan 6, 2026Updated 4 months ago
- GPU-accelerated Image Processing library for C++☆16Updated this week
- An automated point-set based registration algorithm for correlative light and electron microscopy (CLEM)☆21Mar 12, 2026Updated 2 months ago
- ImageJ macros and scripts written at the imaging facility MRI☆39May 21, 2026Updated last week
- Benchmarking Large Language Models for Bio-Image Analysis Code Generation☆25Nov 21, 2024Updated last year
- Resources for teaching/preparing to teach bioimage analysis☆62May 22, 2026Updated last week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A platform for compiling, analyzing, and exploring tracking data☆50Feb 2, 2026Updated 3 months ago
- ilastik plugin for napari☆15Mar 2, 2026Updated 2 months ago
- Loading and handling microscopy data in blender☆152May 22, 2026Updated last week
- ☆21Apr 28, 2026Updated last month
- Annotation of filaments and other curvilinear structures in 3D.☆12Oct 9, 2023Updated 2 years ago
- The known BioVoxxel Toolbox functions now improved for 2D and 3D images☆20Feb 10, 2026Updated 3 months ago
- A minimal dependency napari plugin giving access to scikit-image functions☆23Mar 26, 2026Updated 2 months ago
- Advanced Tool for Labeling And Segmentation☆41Oct 21, 2024Updated last year
- A napari plugin to analysis point spread functions.☆12Apr 27, 2026Updated last month
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- A short course exploring several fun and useful notebooks and Napari widgets for deep learning with SAM, Cellpose, Stardist and friends.☆19Dec 9, 2025Updated 5 months ago
- PoL Bioimage Analysis Training School: GPU-Accelerated Image Analysis Track☆28Jun 5, 2024Updated last year
- Bringing the ZeroCostDL4Mic experience running everywhere via easy-to-install docker images☆86Mar 28, 2026Updated 2 months ago
- A Beginner's guide to microscopy, from sample prep to acquisition, image analysis, and data interpretation☆29Apr 11, 2026Updated last month
- some useful function to get Label from ROIs and vice versa , and more!☆11May 3, 2023Updated 3 years ago
- Use Napari Viewer to display CZI images☆11May 25, 2022Updated 4 years ago
- ☆14May 17, 2024Updated 2 years ago
- The repository of NEUBIAS textbook 2021☆11Jan 24, 2022Updated 4 years ago
- Optimize image processing workflows in napari☆17May 1, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆38Apr 29, 2026Updated last month
- Segmentation method able to detect membrane/nuclei-labelled cells with low signal-to-noise ratio and dense packing in 2D and 3D. Availabl…☆34Oct 8, 2025Updated 7 months ago
- A first intoduction to scripting in Fiji using the ImageJ Macro language.☆27Sep 26, 2024Updated last year
- ☆15Jul 29, 2022Updated 3 years ago
- Fourier analysis and subtomogram averaging of heterogenic cylindrical structures☆17Updated this week
- Guides and code for 3D nuclear instance segmentation☆23Dec 2, 2025Updated 5 months ago
- ☆13May 17, 2026Updated last week