FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets
☆31Nov 4, 2026Updated this week
Alternatives and similar repositories for BigTrace
Users that are interested in BigTrace are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A napari plugin for stitching large multi-positioning datasets in 2/3D+t using multiview-stitcher☆19Updated this week
- MultiModal Big Image Data Sharing and Exploration☆20Jan 13, 2023Updated 3 years ago
- browsing large volumetric data and shapes☆24Oct 15, 2026Updated 3 weeks ago
- Conversion between spatial transformations of various formats / parametrizations☆10May 15, 2026Updated 5 months ago
- Deep Learning segmentation suite designed for 2D microscopy image segmentation☆10Dec 17, 2021Updated 4 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Icons describing multiple microscopy techniques, as used by https://www.epfl.ch/research/facilities/ptbiop/equipment/☆11Oct 14, 2026Updated 3 weeks ago
- ☆22Aug 24, 2026Updated 2 months ago
- An automated point-set based registration algorithm for correlative light and electron microscopy (CLEM)☆23Oct 29, 2026Updated last week
- Commands and Classes for interfacing between Imaris and Fiji☆13Sep 1, 2026Updated 2 months ago
- 3D/4D volumetric rendering of microscopy data☆28Updated this week
- ImageJ macros and scripts written at the imaging facility MRI☆45Oct 27, 2026Updated last week
- Denoising via adaptive binning.☆14Aug 28, 2026Updated 2 months ago
- Loading and handling microscopy data in blender☆164Oct 2, 2026Updated last month
- python tools for BigDataViewer☆23Jul 2, 2026Updated 4 months ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- A minimalistic napari plugin to create and save regions of interest and annotations on series of images☆19Apr 8, 2025Updated last year
- Efficient graph data structures and algorithms for fast slicing, visualization, and editing☆13Jul 1, 2026Updated 4 months ago
- An open-source Python toolkit for large-scale fluorescence microscopy data alignment and fusion.☆11Jul 29, 2026Updated 3 months ago
- 4D reconstruction of developmental trajectories using spherical harmonics☆23Mar 25, 2025Updated last year
- ☆17Aug 3, 2026Updated 3 months ago
- Benchmarking Large Language Models for Bio-Image Analysis Code Generation☆26Jun 3, 2026Updated 5 months ago
- Linearize your support queue☆10Oct 27, 2026Updated last week
- A minimal dependency napari plugin giving access to scikit-image functions☆25Updated this week
- How to use Aligning Big Brains and Atlases with Python☆14May 3, 2023Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- simple standalone BigDataViewer for multiple N5 (or HDF5) datasets☆12Mar 6, 2026Updated 8 months ago
- GPU-accelerated Image Processing library for C++☆16Updated this week
- A platform for compiling, analyzing, and exploring tracking data☆52Oct 22, 2026Updated 2 weeks ago
- Java implementation of Appose ☕☆15Updated this week
- ilastik plugin for napari☆15Mar 2, 2026Updated 8 months ago
- Resources for teaching/preparing to teach bioimage analysis☆65Oct 29, 2026Updated last week
- A napari plugin to analysis point spread functions.☆11Apr 27, 2026Updated 6 months ago
- A tutorial of classical shape analysis methods☆11Nov 25, 2023Updated 2 years ago
- Accurate and efficient spot detection for microscopy data☆148Jun 8, 2026Updated 4 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- PoL Bioimage Analysis Training School: GPU-Accelerated Image Analysis Track☆28Jun 5, 2024Updated 2 years ago
- Reference implementation of the Graph Exchange File Format☆42Updated this week
- Guides and code for 3D nuclear instance segmentation☆25Dec 2, 2025Updated 11 months ago
- A place to collect information used in lectures, demos, workshops, etc.☆17Sep 26, 2024Updated 2 years ago
- Advanced Tool for Labeling And Segmentation☆41Oct 21, 2024Updated 2 years ago
- ☆17Updated this week
- ☆24Aug 26, 2026Updated 2 months ago