UU-cellbiology / BigTraceLinks
FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets
☆29Updated last week
Alternatives and similar repositories for BigTrace
Users that are interested in BigTrace are comparing it to the libraries listed below
Sorting:
- A short course exploring several fun and useful notebooks and Napari widgets for deep learning with SAM, Cellpose, Stardist and friends.☆18Updated 2 weeks ago
- Process and analyze surfaces using vedo in napari.☆25Updated last year
- A place to collect information used in lectures, demos, workshops, etc.☆17Updated last year
- This repository hosts notebooks, information and data for the Quantitative Bio-Image Analysis with Python Course 2022.☆16Updated 3 years ago
- ☆51Updated 7 months ago
- A minimal dependency napari plugin giving access to scikit-image functions☆23Updated 3 months ago
- ☆15Updated last week
- dask empowered fast4dreg☆15Updated last year
- An automated point-set based registration algorithm for correlative light and electron microscopy (CLEM)☆19Updated last month
- ZELDA: a 3D Image Segmentation and Parent to Child relation plugin for microscopy image analysis in napari☆24Updated last week
- A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…☆30Updated 7 months ago
- Segment images utilizing pre-trained neural networks as feature extractors☆43Updated 3 weeks ago
- python tools for BigDataViewer☆22Updated 11 months ago
- PoL Bioimage Analysis Training School: GPU-Accelerated Image Analysis Track☆28Updated last year
- ☆12Updated 3 months ago
- A template repo used to make new napari plugins☆29Updated this week
- Browse your OMERO database from within napari.☆39Updated this week
- A napari plugin for making image annotation using feature space of vision transformers and Random Forest classifier☆21Updated last week
- A napari plugin to view and edit metadata☆12Updated 2 years ago
- Feature extraction for labeled objects in images using regionprops from scikit-image☆52Updated 7 months ago
- A toolbox for registering / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.☆94Updated 2 weeks ago
- ☆13Updated 5 years ago
- A napari plugin for stitching large multi-positioning datasets in 2/3D+t using multiview-stitcher☆16Updated 4 months ago
- Fast4DReg is a Fiji script for quick drift correction in time-lapse 3D-stacks. The script can be used to correct drift in all x-, y- and/…☆40Updated 7 months ago
- Benchmarking Large Language Models for Bio-Image Analysis Code Generation☆25Updated last year
- Resources for teaching/preparing to teach bioimage analysis☆58Updated last week
- MultiModal Big Image Data Sharing and Exploration☆18Updated 2 years ago
- Multiple file format reading directly into napari using pure Python☆39Updated last month
- ☆36Updated last year
- ☆42Updated this week