Guides and code for 3D nuclear instance segmentation
☆23Dec 2, 2025Updated 3 months ago
Alternatives and similar repositories for go-nuclear
Users that are interested in go-nuclear are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- General Image Analysis of Nuclei-containing Images☆10Jul 11, 2025Updated 8 months ago
- MiC is an ImageJ plugin to compare segmentation masks☆19Jun 4, 2025Updated 9 months ago
- ☆23Mar 26, 2021Updated 4 years ago
- A short course exploring several fun and useful notebooks and Napari widgets for deep learning with SAM, Cellpose, Stardist and friends.☆19Dec 9, 2025Updated 3 months ago
- Cell tracking and segmentation software☆174Updated this week
- A JupyterBook site for napari workshop materials☆10Jul 11, 2022Updated 3 years ago
- ☆13Nov 24, 2025Updated 3 months ago
- ☆12May 6, 2024Updated last year
- ☆215Feb 4, 2026Updated last month
- Nellie: Automated organelle segmentation, tracking, and hierarchical feature extraction in 2D/3D live-cell microscopy☆90Jan 14, 2026Updated 2 months ago
- QuPath extension for Cellsparse☆19May 6, 2025Updated 10 months ago
- An automated point-set based registration algorithm for correlative light and electron microscopy (CLEM)☆21Mar 12, 2026Updated last week
- Deep Learning segmentation suite designed for 2D microscopy image segmentation☆10Dec 17, 2021Updated 4 years ago
- ShapeEmbedLite: a lightweight self-supervised representation learning model for 2D shape analysis☆21Oct 13, 2025Updated 5 months ago
- The computational platform u-signal3D defines a shape-invariant representation of the spatial scales of molecular organization at the cel…☆11Mar 12, 2026Updated last week
- Ngio is a Python library to streamline OME-Zarr image analysis workflows.☆47Updated this week
- Panoptic segmentation algorithms for 2D and 3D electron microscopy in napari☆31Mar 12, 2026Updated last week
- Block-wise operations for large nD volumes☆45Updated this week
- dask empowered fast4dreg☆15Mar 11, 2026Updated last week
- Training resources for Students at Uni Leipzig who want to dive into bio-image data science with Python. The material will develop betwee…☆39Jul 9, 2024Updated last year
- An ImageJ/Fiji plugin designed to effortlessly integrate Segment-Anything models (SAMs) without code.☆88Mar 13, 2026Updated last week
- Running compute-intense parts of BigStitcher distributed☆30Updated this week
- Segment images utilizing pre-trained neural networks as feature extractors☆48Feb 25, 2026Updated 3 weeks ago
- Generate consensus 3D cells segmentations by combining 2D cell segmentations from any combination of xy, xz, yz views, compatible with ou…☆63Feb 10, 2026Updated last month
- A plugin to visualise 3D spatial single cell omics☆20Oct 22, 2025Updated 5 months ago
- Affinity based segmentation algorithms and tools☆10May 12, 2025Updated 10 months ago
- The known BioVoxxel Toolbox functions now improved for 2D and 3D images☆20Feb 10, 2026Updated last month
- ZELDA: a 3D Image Segmentation and Parent to Child relation plugin for microscopy image analysis in napari☆25Nov 25, 2025Updated 3 months ago
- A place to collect information used in lectures, demos, workshops, etc.☆17Sep 26, 2024Updated last year
- FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets☆29Mar 11, 2026Updated last week
- PoL Bioimage Analysis Training School: GPU-Accelerated Image Analysis Track☆28Jun 5, 2024Updated last year
- A napari plugin for stitching large multi-positioning datasets in 2/3D+t using multiview-stitcher☆17Mar 4, 2026Updated 2 weeks ago
- ImageJ macros and scripts written at the imaging facility MRI☆37Feb 11, 2026Updated last month
- Python program to generate NetworkX graphs from segmented images.☆14Apr 14, 2023Updated 2 years ago
- A python algorithm for tracking cells in 3D deforming organs☆69Nov 13, 2025Updated 4 months ago
- A tool for cell instance aware segmentation in densely packed 3D volumetric images☆124Mar 11, 2026Updated last week
- Accurate and efficient spot detection for microscopy data☆117Feb 5, 2026Updated last month
- A collection of useful python utilities from True North Intelligent Algorithms☆43Feb 2, 2026Updated last month
- A python package for fitting splines.☆23Mar 3, 2026Updated 3 weeks ago