Python package that uses colorspace-based segmentation to analyze histopathology images.
☆13Feb 7, 2024Updated 2 years ago
Alternatives and similar repositories for PyHistology
Users that are interested in PyHistology are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- PyTextureAnalysis is a Python package for analyzing the texture of images. It includes functions for calculating local orientation, degre…☆30Sep 9, 2024Updated last year
- ☆14Jan 26, 2021Updated 5 years ago
- Code and data belonging to "Raw data to results: a hands-on introduction and overview of computational analysis for single-molecule local…☆11Mar 7, 2022Updated 4 years ago
- A napari plugin for stitching large multi-positioning datasets in 2/3D+t using multiview-stitcher☆17Mar 4, 2026Updated 3 weeks ago
- ☆16Jul 21, 2023Updated 2 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- napari plugin for trackastra☆17Nov 12, 2025Updated 4 months ago
- Python program to generate NetworkX graphs from segmented images.☆14Apr 14, 2023Updated 2 years ago
- Denoising via adaptive binning.☆13Jan 6, 2026Updated 2 months ago
- ☆21Mar 11, 2026Updated 2 weeks ago
- SplineDist: Automated Cell Segmentation with Spline Curves☆72Sep 29, 2024Updated last year
- User-affordable and versatile light-sheet microscopy system for cleared specimens☆27Mar 14, 2025Updated last year
- A place to collect information used in lectures, demos, workshops, etc.☆17Sep 26, 2024Updated last year
- A collection of resources on bioimage analysis and related tools and techniques☆14Apr 28, 2023Updated 2 years ago
- ☆24Sep 13, 2025Updated 6 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- Fluorescence Lifetime Ultimate Explorer (FLUTE) is a GUI for exploring and analyzing Fluorescence Lifetime Microscopy (FLIM) data☆28Nov 17, 2025Updated 4 months ago
- MiC is an ImageJ plugin to compare segmentation masks☆19Jun 4, 2025Updated 9 months ago
- A useful script for converting voc format annotations(generated by LabelImg or Labelme) to coco format annotations☆18Jan 15, 2020Updated 6 years ago
- 1d plotting in napari-based canvas.☆25Mar 16, 2026Updated last week
- Process and analyze surfaces using vedo in napari.☆25May 13, 2024Updated last year
- Online documentation and reference for CLIJ☆28May 21, 2021Updated 4 years ago
- ☆12Oct 7, 2020Updated 5 years ago
- Panoptic segmentation algorithms for 2D and 3D electron microscopy in napari☆33Updated this week
- The Java library to run Deep Learning models☆33Mar 11, 2026Updated 2 weeks ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Speed up coding/extending image analysis in Python.☆37Jan 20, 2026Updated 2 months ago
- A tool for manual pointwise deformable registration using bigdataviewer.☆35Mar 18, 2026Updated last week
- Guides and code for 3D nuclear instance segmentation☆23Dec 2, 2025Updated 3 months ago
- simple standalone BigDataViewer for multiple N5 (or HDF5) datasets☆12Mar 6, 2026Updated 3 weeks ago
- Generate multifunctional and macro recordable GUIs from Python classes☆45Mar 5, 2026Updated 3 weeks ago
- Multiscale Image Restoration for fluorescence microscopy☆10Jun 17, 2023Updated 2 years ago
- 3D shape analysis using deep learning☆31Oct 8, 2025Updated 5 months ago
- An ImageJ script to align and stitch three-dimensional tiles and quickly explore terabyte-sized microscopy datasets☆13Feb 22, 2022Updated 4 years ago
- Qt utilities to enable hot-reloading of python/Qt code☆12Nov 24, 2025Updated 4 months ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Plugin for Cura slicer☆10Feb 1, 2023Updated 3 years ago
- Generate consensus 3D cells segmentations by combining 2D cell segmentations from any combination of xy, xz, yz views, compatible with ou…☆63Feb 10, 2026Updated last month
- ☆13Aug 7, 2020Updated 5 years ago
- Image processing for cryo-electron microscopy in PyTorch☆13Apr 5, 2025Updated 11 months ago
- Use ImageJ functionality from napari☆33Jan 2, 2026Updated 2 months ago
- ☆37Dec 13, 2023Updated 2 years ago
- Use the Raspberry PI HQ Camera with a (gemmological) microscope. Fully interactive vue based. Designed by a Gemmologist :)☆12Mar 13, 2023Updated 3 years ago