mobie / mobie-viewer-fiji
☆33Updated this week
Related projects ⓘ
Alternatives and complementary repositories for mobie-viewer-fiji
- Wrappers for external software calls (Cellpose, Elastix, Ilastix...) and java utilities (object conversions and display)☆32Updated last month
- Raw format to OME-TIFF converter☆49Updated last week
- Browse your OMERO database from within napari.☆33Updated 2 weeks ago
- Visualizing feature measurements on label images in napari☆10Updated 4 months ago
- Whole slide image registration through wsireg in napari.☆12Updated last year
- FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets☆28Updated this week
- A module with convenience functions for writing Python code that interacts with OMERO.☆39Updated 3 weeks ago
- A nextflow based tool that wraps bfconvert and bioformats2raw to convert image data collections to OME-TIFF and OME-Zarr, respectively, i…☆19Updated 3 weeks ago
- Feature extraction for labeled objects in images using regionprops from scikit-image☆47Updated last month
- Guides and code for 3D nuclear instance segmentation☆19Updated this week
- Fast4DReg is a Fiji script for quick drift correction in time-lapse 3D-stacks. The script can be used to correct drift in all x-, y- and/…☆37Updated last month
- ☆29Updated 8 months ago
- Basic example of using OME-Zarr in a Nextflow pipeline☆15Updated last week
- Segmentation method able to detect membrane/nuclei-labelled cells with low signal-to-noise ratio and dense packing in 2D and 3D. Availabl…☆33Updated 2 weeks ago
- An automated point-set based registration algorithm for correlative light and electron microscopy (CLEM)☆12Updated 4 months ago
- native Python dataclasses for the OME data model☆53Updated this week
- Multiple file format reading directly into napari using pure Python☆33Updated 4 months ago
- A platform for compiling, analyzing, and exploring tracking data☆42Updated 3 weeks ago
- MethodsJ2☆14Updated 2 years ago
- ☆20Updated last year
- napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool☆48Updated 3 weeks ago
- A napari plugin for zarr backed OME-NGFF images☆30Updated this week
- GPU-accelerated, OpenCL-based Random Forest Classifiers for pixel and labeled object classification in napari.☆43Updated last year
- Benchmarking Large Language Models for Bio-Image Analysis Code Generation☆20Updated this week
- ☆43Updated last month
- A toolbox for registering / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.☆57Updated this week
- GPU-accelerated image processing for everyone☆48Updated 4 months ago
- ☆21Updated 2 months ago
- ilastik plugin for napari☆13Updated 7 months ago
- A writer and reader for NGFF OME-Zarr datasets☆14Updated 3 years ago