AllenCell/aics-shparam external links

---

GitHub - View repository

GitHub.dev - Open in online code editor

Star history - Growth chart over time

deps.dev - Dependencies and security vulnerabilities

Gitingest - Export source code for LLM usage

Repomix - Export source code for LLM usage

uithub - Export source code for LLM usage

Close

AllenCell/aics-shparam

Readme badge preview -

If you own this repo, copy the snippet below and add it to your README.md

---

Copy

[![RelatedRepos](https://img.shields.io/badge/related-repos-yellow)](https://relatedrepos.com/gh/AllenCell/aics-shparam)

Close

AllenCell / aics-shparamView on GitHubMore

• External links
• Readme badge

☆22May 1, 2025Updated 10 months ago

Alternatives and similar repositories for aics-shparam

Users that are interested in aics-shparam are comparing it to the libraries listed below

• gioda / FeARLesS

  View on GitHub
  4D reconstruction of developmental trajectories using spherical harmonics
  ☆23Mar 25, 2025Updated 11 months ago
• DanuserLab / u-shape3D

  View on GitHub
  Detect morphological motifs, such as blebs, filopodia, and lamellipodia, from 3D images of surfaces, particularly images of cell surfaces…
  ☆31Jan 22, 2026Updated last month
• AllenCell / cvapipe_analysis

  View on GitHub
  Analysis of data produced by cvapipe for the variance paper
  ☆24Dec 23, 2024Updated last year
• kreshuklab / MorphoFeatures

  View on GitHub
  MorphoFeatures code and data
  ☆22May 4, 2023Updated 2 years ago
• epigen / scifiRNA-seq_publication

  View on GitHub
  The million-scale method for single-cell analysis
  ☆10Jul 6, 2023Updated 2 years ago
• MarioniLab / CELLOseq

  View on GitHub
  Transposable element expression at unique loci in single cells with CELLO-seq
  ☆11Jun 17, 2024Updated last year
• AllenCellModeling / actk

  View on GitHub
  Automated Cell Toolkit
  ☆24Oct 15, 2025Updated 4 months ago
• uhlmanngroup / splinedist

  View on GitHub
  SplineDist: Automated Cell Segmentation with Spline Curves
  ☆70Sep 29, 2024Updated last year
• myylee / benchmark_sc_multiomic_integration

  View on GitHub
  ☆10Oct 12, 2023Updated 2 years ago
• ejarmand / comparative_epigenomic_motor_cortex

  View on GitHub
  ☆10Dec 11, 2024Updated last year
• ZhuangLab / whole_mouse_brain_MERFISH_atlas_scripts_2023

  View on GitHub
  ☆13Mar 29, 2024Updated last year
• AllenCell / aics-segmentation

  View on GitHub
  Part 1 of Allen Cell and Structure Segmenter: classic image segmentation workflow
  ☆25Jul 22, 2024Updated last year
• juglab / DecoNoising

  View on GitHub
  ☆10Aug 22, 2020Updated 5 years ago
• epigen / scifiRNA-seq

  View on GitHub
  ☆12Dec 7, 2020Updated 5 years ago
• AdelmanLab / NIH_scripts

  View on GitHub
  A collection of perl scripts for NGS analysis
  ☆17Oct 2, 2024Updated last year
• Blairewen / Arabidopsis-Pollen

  View on GitHub
  ☆15Jan 28, 2023Updated 3 years ago
• hubmapconsortium / spatial-transcriptomics-pipeline

  View on GitHub
  ☆29Apr 26, 2024Updated last year
• liulab-dfci / TRUST4_manuscript_evaluation

  View on GitHub
  TRUST4 manuscript evaluation
  ☆16Jul 8, 2022Updated 3 years ago
• jaymahat / scGROseq

  View on GitHub
  scGRO-seq analyses codes
  ☆13Jan 9, 2024Updated 2 years ago
• imyiningliu / cellstitch

  View on GitHub
  ☆12Jan 27, 2024Updated 2 years ago
• JaneliaSciComp / xarray-multiscale

  View on GitHub
  scalable multiscale image pyramids in python
  ☆29Jul 25, 2024Updated last year
• shishenyxx / Adult_brain_somatic_mosaicism

  View on GitHub
  This repository collects pipelines, codes, and some intermediate results for adult brain somatic mosaicism study.
  ☆15Jun 14, 2025Updated 8 months ago
• theislab / campa

  View on GitHub
  Conditional Autoencoders for Multiplexed Pixel Analysis
  ☆18Nov 25, 2022Updated 3 years ago
• multiview-stitcher / napari-stitcher

  View on GitHub
  A napari plugin for stitching large multi-positioning datasets in 2/3D+t using multiview-stitcher
  ☆17Jul 7, 2025Updated 7 months ago
• CamaraLab / CAJAL

  View on GitHub
  A Python package using Gromov-Wasserstein distance to compare cell shapes
  ☆22Jan 21, 2026Updated last month
• janelia-cellmap / fibsem-tools

  View on GitHub
  Tools for handling FIB-SEM data and annotations
  ☆22Apr 4, 2025Updated 10 months ago
• bowang-lab / OCAT

  View on GitHub
  ☆18Oct 22, 2024Updated last year
• lowe-lab-ucl / cellx-predict

  View on GitHub
  Explainable AI model of cell behavior
  ☆20Apr 4, 2023Updated 2 years ago
• goodarzilab / SwitchFinder

  View on GitHub
  ☆20Jul 16, 2024Updated last year
• ma-compbio / Fast-Higashi

  View on GitHub
  single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, tensor decomposition
  ☆20Sep 12, 2023Updated 2 years ago
• XiaoTaoWang / StripeCaller

  View on GitHub
  A toolkit for analyzing architectural stripes
  ☆20Dec 1, 2024Updated last year
• aertslab / scATAC-seq_benchmark

  View on GitHub
  ☆19Dec 15, 2023Updated 2 years ago
• JunyueCaoLab / EasySci

  View on GitHub
  Computational pipeline to process EasySci-RNA data.
  ☆22Jan 17, 2024Updated 2 years ago
• germannp / yalla

  View on GitHub
  Spheroid models of morphogenesis for the GPU.
  ☆45Oct 12, 2025Updated 4 months ago
• brianpenghe / python-genomics

  View on GitHub
  A set of files to do genomics analysis on python
  ☆18Jun 5, 2025Updated 8 months ago
• b2jia / jie

  View on GitHub
  A spatial genome aligner for analyzing multiplexed DNA-FISH imaging data.
  ☆18Oct 10, 2023Updated 2 years ago
• mhorlacher / rbpnet

  View on GitHub
  ☆19Mar 21, 2024Updated last year
• haesleinhuepf / napari-simpleitk-image-processing

  View on GitHub
  Process images using SimpleITK in napari
  ☆23May 1, 2025Updated 10 months ago
• janelia-cellmap / dacapo

  View on GitHub
  A framework for easy application of established machine learning techniques on large, multi-dimensional images.
  ☆60Sep 15, 2025Updated 5 months ago