Alternatives and similar repositories for aics-shparam:

Users that are interested in aics-shparam are comparing it to the libraries listed below

• AllenCell / aics-segmentation
  Part 1 of Allen Cell and Structure Segmenter: classic image segmentation workflow
  ☆27Updated 9 months ago
• VasylVaskivskyi / microaligner
  Image registration (alignment) software for large microscopy images
  ☆25Updated last year
• kreshuklab / go-nuclear
  Guides and code for 3D nuclear instance segmentation
  ☆22Updated last week
• imyiningliu / cellstitch
  ☆10Updated last year
• GuignardLab / napari-sc3D-viewer
  A plugin to visualise 3D spatial single cell omics
  ☆22Updated last year
• CamaraLab / CAJAL
  A Python package using Gromov-Wasserstein distance to compare cell shapes
  ☆17Updated 2 months ago
• AllenCell / aics-ml-segmentation
  ☆31Updated 2 years ago
• labsyspharm / cylinter
  An Interactive Image Segmentation Filter for Multiplex Microscopy
  ☆30Updated 3 months ago
• JaneliaSciComp / multifish
  EASI-FISH analysis pipeline for spatial transcriptomics
  ☆34Updated 5 months ago
• NHPatterson / napari-wsireg
  Whole slide image registration through wsireg in napari.
  ☆13Updated 2 years ago
• kreshuklab / MorphoFeatures
  MorphoFeatures code and data
  ☆21Updated 2 years ago
• DanuserLab / u-segment3D
  Generate consensus 3D cells segmentations by combining 2D cell segmentations from any combination of xy, xz, yz views, compatible with ou…
  ☆17Updated last month
• fmicompbio / ez_zarr
  GIve easy, high-level access to ome-zarr fileset
  ☆14Updated this week
• wahlby-lab / graph-iss
  Graph-based Decoding for In Situ Sequencing
  ☆10Updated 4 years ago
• KristinaUlicna / DeepTree
  Jupyter notebooks for deep lineage analysis of single-cell heterogeneity and cell cycling duration heritability.
  ☆30Updated 4 years ago
• fractal-analytics-platform / fractal-client
  Command-line client for Fractal
  ☆45Updated last week
• miti-consortium / MITI
  Minimum Information about Tissue Imaging
  ☆20Updated last year
• ksugar / qupath-extension-cellsparse
  QuPath extension for Cellsparse
  ☆18Updated last week
• scverse / napari-spatialdata
  Interactive visualization of spatial omics data
  ☆55Updated this week
• BiAPoL / napari-clusters-plotter
  A napari plugin for clustering objects according to their properties.
  ☆84Updated this week
• TheJacksonLaboratory / ezomero
  A module with convenience functions for writing Python code that interacts with OMERO.
  ☆44Updated 2 weeks ago
• murphygroup / CellSegmentationEvaluator
  Evaluating the quality of a cell segmentation method without reference.
  ☆11Updated this week
• zjniu / Piscis
  An automatic deep learning algorithm for spot detection in fluorescence microscopy images.
  ☆20Updated 3 months ago
• Michael-shannon / cellPLATO
  The 2023 version of cellPLATO
  ☆14Updated 5 months ago
• krentzd / napari-clemreg
  An automated point-set based registration algorithm for correlative light and electron microscopy (CLEM)
  ☆16Updated 2 weeks ago
• KerenLab / CellSighter
  ☆32Updated last year
• nygctech / PICASSO
  Development of PICASSO plugin for napari
  ☆17Updated 2 years ago
• AllenCell / cvapipe_analysis
  Analysis of data produced by cvapipe for the variance paper
  ☆23Updated 4 months ago
• PreibischLab / STIM
  Library for managing, storage, viewing, and working with spatial transcriptomics data using Imglib2, N5, BigDataViewer and Fiji.
  ☆27Updated 2 months ago
• DanuserLab / u-shape3D
  Detect morphological motifs, such as blebs, filopodia, and lamellipodia, from 3D images of surfaces, particularly images of cell surfaces…
  ☆29Updated 3 weeks ago