AllenCell / aics-shparam
☆20Updated this week
Alternatives and similar repositories for aics-shparam:
Users that are interested in aics-shparam are comparing it to the libraries listed below
- Guides and code for 3D nuclear instance segmentation☆22Updated last month
- Whole slide image registration through wsireg in napari.☆13Updated last year
- Part 1 of Allen Cell and Structure Segmenter: classic image segmentation workflow☆28Updated 8 months ago
- Image registration (alignment) software for large microscopy images☆25Updated last year
- A plugin to visualise 3D spatial single cell omics☆22Updated last year
- 4D reconstruction of developmental trajectories using spherical harmonics☆21Updated 3 weeks ago
- ☆10Updated last year
- A Python package using Gromov-Wasserstein distance to compare cell shapes☆17Updated last month
- Napari Visualization tool for Trackmate > 6.0 and bTrackmate XML files for 2/3D + time tracks. Available via pip package napatrackmater.☆16Updated last week
- Detect morphological motifs, such as blebs, filopodia, and lamellipodia, from 3D images of surfaces, particularly images of cell surfaces…☆29Updated this week
- Generate consensus 3D cells segmentations by combining 2D cell segmentations from any combination of xy, xz, yz views, compatible with ou…☆16Updated last month
- GIve easy, high-level access to ome-zarr fileset☆14Updated 2 weeks ago
- ☆31Updated 2 years ago
- ☆20Updated last year
- A template repo used to make new napari plugins☆17Updated last week
- MorphoFeatures code and data☆20Updated last year
- An Ilastik-like interactive pixel classifier.☆16Updated 7 months ago
- Visualizing feature measurements on label images in napari☆10Updated 8 months ago
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆30Updated 2 months ago
- Command-line client for Fractal☆45Updated last week
- An automatic deep learning algorithm for spot detection in fluorescence microscopy images.☆19Updated 3 months ago
- Time arrow prediction for live-cell microscopy☆18Updated 10 months ago
- Track and lineage visualization with btrack and Napari☆45Updated 5 months ago
- Analysis of data produced by cvapipe for the variance paper☆23Updated 3 months ago
- EASI-FISH analysis pipeline for spatial transcriptomics☆34Updated 4 months ago
- ZELDA: a 3D Image Segmentation and Parent to Child relation plugin for microscopy image analysis in napari☆20Updated 4 months ago
- ☆32Updated last year
- Multi-Object Tracker using Integer Linear Equations☆30Updated 2 weeks ago
- An automated point-set based registration algorithm for correlative light and electron microscopy (CLEM)☆16Updated 2 weeks ago
- Process and analyze surfaces using vedo in napari.☆23Updated 11 months ago