WenChentao / 3DeeCellTrackerView external linksLinks
A python algorithm for tracking cells in 3D deforming organs
☆68Nov 13, 2025Updated 3 months ago
Alternatives and similar repositories for 3DeeCellTracker
Users that are interested in 3DeeCellTracker are comparing it to the libraries listed below
Sorting:
- Track and lineage visualization with btrack and Napari☆45Sep 29, 2025Updated 4 months ago
- ZELDA: a 3D Image Segmentation and Parent to Child relation plugin for microscopy image analysis in napari☆25Nov 25, 2025Updated 2 months ago
- Guides and code for 3D nuclear instance segmentation☆22Dec 2, 2025Updated 2 months ago
- Process and analyze surfaces using vedo in napari.☆25May 13, 2024Updated last year
- Cell tracking and segmentation software☆170Updated this week
- Napari plugin for custom analysis and visualization of lattice lightsheet and Oblique Plane Microscopy data. The plugin is optimized for …☆14Feb 4, 2026Updated last week
- SciCount is tool focused on counting and classifying of objects in image-like data and scientific images, with training and example datas…☆11Oct 24, 2023Updated 2 years ago
- Image reading, metadata management, and image writing for Microscopy images in Python☆112Dec 22, 2025Updated last month
- A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…☆30May 1, 2025Updated 9 months ago
- napari plugin for trackastra☆17Nov 12, 2025Updated 3 months ago
- ☆18May 5, 2023Updated 2 years ago
- MiC is an ImageJ plugin to compare segmentation masks☆19Jun 4, 2025Updated 8 months ago
- SplineDist: Automated Cell Segmentation with Spline Curves☆70Sep 29, 2024Updated last year
- Transformer-based cell tracking for live-cell microscopy☆123Feb 1, 2026Updated 2 weeks ago
- Annotate microscopy images for CNN classifier☆11May 31, 2022Updated 3 years ago
- StarDist plugin for napari☆38Aug 24, 2024Updated last year
- Spotiflow plugin for napari☆15Feb 2, 2026Updated 2 weeks ago
- A napari Plugin for visualisaton of pixel values over time (t+ nD) as graphs.☆12Apr 24, 2024Updated last year
- ☆12Sep 5, 2025Updated 5 months ago
- Threshold independent detection and localization of diffraction-limited spots.☆38Nov 1, 2022Updated 3 years ago
- Get Your Brain Together Neuroimage Registration Workshops and Hackathons☆21Nov 14, 2024Updated last year
- A Python GUI-based framework for segmentation, tracking and cell cycle annotations of microscopy data☆192Updated this week
- Course on Deep Learning for imaging using PyTorch☆13Feb 2, 2022Updated 4 years ago
- Code for the image processing and analysis described our Nature Protocols paper.☆10Jun 26, 2015Updated 10 years ago
- ☆12Jun 29, 2021Updated 4 years ago
- Speed up coding/extending image analysis in Python.☆37Jan 20, 2026Updated 3 weeks ago
- Archived: control, reconstruction, and analysis code for oblique plane microscopy.☆22Apr 1, 2025Updated 10 months ago
- Benchmarking Large Language Models for Bio-Image Analysis Code Generation☆25Nov 21, 2024Updated last year
- Track cells and build cell lineages☆35Aug 6, 2024Updated last year
- Use Napari Viewer to display CZI images☆11May 25, 2022Updated 3 years ago
- ☆14Jan 25, 2024Updated 2 years ago
- ☆13Apr 27, 2020Updated 5 years ago
- ☆13Nov 24, 2025Updated 2 months ago
- napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool☆61Oct 27, 2024Updated last year
- Segment images utilizing pre-trained neural networks as feature extractors☆47Jan 21, 2026Updated 3 weeks ago
- Script that registers Histology slices to volumetric image data☆11Oct 4, 2023Updated 2 years ago
- A collection of resources on bioimage analysis and related tools and techniques☆14Apr 28, 2023Updated 2 years ago
- Accelerated Pixel and Object Classifiers (APOC)☆59Jul 18, 2025Updated 6 months ago
- A multi-dimensional spatial image data structure for scientific Python.☆44Aug 8, 2025Updated 6 months ago