WenChentao / 3DeeCellTrackerLinks
A python algorithm for tracking cells in 3D time lapse images.
☆60Updated 3 months ago
Alternatives and similar repositories for 3DeeCellTracker
Users that are interested in 3DeeCellTracker are comparing it to the libraries listed below
Sorting:
- Accelerated Pixel and Object Classifiers (APOC)☆56Updated 4 months ago
- napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool☆54Updated 8 months ago
- 3D Extension of the Cellpose Algorithm by Stringer et al., 2021.☆35Updated 2 years ago
- Transformer-based cell tracking for live-cell microscopy☆75Updated last month
- Python-based Human-In-the-LOop Workflow: PHILOW is an interactive deep learning-based platform for 3D datasets☆26Updated 5 months ago
- Utils and convenience functions for large-scale bio-image analysis.☆57Updated 3 weeks ago
- An ImageJ/Fiji plugin designed to effortlessly integrate Segment-Anything models (SAMs) without code.☆71Updated last week
- Cookiecutter for napari plugins☆70Updated 8 months ago
- Website for the BioImage Model zoo -- a model zoo for bioimage analysis.☆60Updated 2 weeks ago
- StarDist plugin for napari☆38Updated 10 months ago
- A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…☆27Updated 2 months ago
- ☆32Updated 2 years ago
- Cell tracking and segmentation software☆121Updated this week
- A Python GUI-based framework for segmentation, tracking and cell cycle annotations of microscopy data☆179Updated this week
- Segmentation method able to detect membrane/nuclei-labelled cells with low signal-to-noise ratio and dense packing in 2D and 3D. Availabl…☆33Updated 3 months ago
- A napari plugin for clustering objects according to their properties.☆87Updated last week
- Feature extraction for labeled objects in images using regionprops from scikit-image☆50Updated 2 months ago
- A tool for cell instance aware segmentation in densely packed 3D volumetric images☆114Updated this week
- Tools for distributed alignment of massive images☆84Updated 3 weeks ago
- GPU-accelerated general purpose image processing and image analysis in napari☆35Updated 2 months ago
- Python Jupyter notebooks for BioImageAnalysis, GPU-accelerated image processing, bio-image data science and more☆140Updated last month
- SplineDist: Automated Cell Segmentation with Spline Curves☆67Updated 9 months ago
- Bringing the ZeroCostDL4Mic experience running everywhere via easy-to-install docker images☆80Updated 2 months ago
- Nanoscopy library for Python (NanoPyx, the successor to NanoJ) - focused on light microscopy and super-resolution imaging☆80Updated last week
- simple package for augmentation of n-dimensional arrays☆33Updated last year
- This is the repository for a Python bioimage analysis course which establishes the fundamentals of image analysis in the context of biolo…☆134Updated 5 years ago
- Course and exercises on deep learning for microscopy image analysis☆19Updated last month
- Open source Python library for building bioimage analysis pipelines☆178Updated this week
- Track and lineage visualization with btrack and Napari☆45Updated 8 months ago
- Particle tracking by solving linear assignment problem.☆53Updated last month