A python algorithm for tracking cells in 3D deforming organs
☆69Nov 13, 2025Updated 4 months ago
Alternatives and similar repositories for 3DeeCellTracker
Users that are interested in 3DeeCellTracker are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Track and lineage visualization with btrack and Napari☆45Sep 29, 2025Updated 6 months ago
- Guides and code for 3D nuclear instance segmentation☆23Dec 2, 2025Updated 3 months ago
- ZELDA: a 3D Image Segmentation and Parent to Child relation plugin for microscopy image analysis in napari☆25Nov 25, 2025Updated 4 months ago
- ☆18May 5, 2023Updated 2 years ago
- Cell tracking and segmentation software☆174Mar 20, 2026Updated last week
- NordVPN Threat Protection Pro™ • AdTake your cybersecurity to the next level. Block phishing, malware, trackers, and ads. Lightweight app that works with all browsers.
- Process and analyze surfaces using vedo in napari.☆25May 13, 2024Updated last year
- A napari Plugin for visualisaton of pixel values over time (t+ nD) as graphs.☆13Apr 24, 2024Updated last year
- SciCount is tool focused on counting and classifying of objects in image-like data and scientific images, with training and example datas…☆11Oct 24, 2023Updated 2 years ago
- Napari plugin for custom analysis and visualization of lattice lightsheet and Oblique Plane Microscopy data. The plugin is optimized for …☆14Mar 16, 2026Updated last week
- napari plugin for trackastra☆17Nov 12, 2025Updated 4 months ago
- ☆12Jun 29, 2021Updated 4 years ago
- Transformer-based cell tracking for live-cell microscopy☆125Feb 1, 2026Updated last month
- A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…☆30May 1, 2025Updated 10 months ago
- Threshold independent detection and localization of diffraction-limited spots.☆38Nov 1, 2022Updated 3 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- SplineDist: Automated Cell Segmentation with Spline Curves☆72Sep 29, 2024Updated last year
- StarDist plugin for napari☆39Aug 24, 2024Updated last year
- Image reading, metadata management, and image writing for Microscopy images in Python☆118Mar 19, 2026Updated last week
- Code for the image processing and analysis described our Nature Protocols paper.☆10Jun 26, 2015Updated 10 years ago
- MiC is an ImageJ plugin to compare segmentation masks☆19Jun 4, 2025Updated 9 months ago
- Segment images utilizing pre-trained neural networks as feature extractors☆49Feb 25, 2026Updated last month
- Track cells and build cell lineages☆35Aug 6, 2024Updated last year
- Get Your Brain Together Neuroimage Registration Workshops and Hackathons☆22Nov 14, 2024Updated last year
- Cell tracker designed for tracking intestinal organoids☆35Updated this week
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- [ECCV 2022] Official PyTorch implementation of the paper - Graph Neural Network for Cell Tracking in Microscopy Videos☆77Nov 30, 2022Updated 3 years ago
- Archived: control, reconstruction, and analysis code for oblique plane microscopy.☆22Apr 1, 2025Updated 11 months ago
- Annotate microscopy images for CNN classifier☆11May 31, 2022Updated 3 years ago
- A minimal package for saving and reading large HDF5-based chunked arrays.☆15Apr 12, 2022Updated 3 years ago
- PyTorch implementation of 2D and 3D StarDist - Object Detection with Star-convex Shapes☆27Feb 10, 2023Updated 3 years ago
- ZeroCostDL4Mic: A Google Colab based no-cost toolbox to explore Deep-Learning in Microscopy☆633Mar 19, 2026Updated last week
- A multi-dimensional spatial image data structure for scientific Python.☆44Aug 8, 2025Updated 7 months ago
- A Python GUI-based framework for segmentation, tracking and cell cycle annotations of microscopy data☆193Updated this week
- Speed up coding/extending image analysis in Python.☆37Jan 20, 2026Updated 2 months ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- A napari plugin for clustering objects according to their properties.☆90Updated this week
- napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool☆63Oct 27, 2024Updated last year
- ☆13Nov 24, 2025Updated 4 months ago
- Spotiflow plugin for napari☆15Feb 2, 2026Updated last month
- Course on Deep Learning for imaging using PyTorch☆13Feb 2, 2022Updated 4 years ago
- Use Napari Viewer to display CZI images☆11May 25, 2022Updated 3 years ago
- ☆12Feb 23, 2026Updated last month