WenChentao / 3DeeCellTracker

Related projects ⓘ

Alternatives and complementary repositories for 3DeeCellTracker

• constantinpape / elf
  Utils and convenience functions for large-scale bio-image analysis.
  ☆48Updated 3 weeks ago
• MouseLand / cellpose-napari
  napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool
  ☆47Updated 2 weeks ago
• haesleinhuepf / apoc
  Accelerated Pixel and Object Classifiers (APOC)
  ☆51Updated last year
• stegmaierj / Cellpose3D
  3D Extension of the Cellpose Algorithm by Stringer et al., 2021.
  ☆31Updated 2 years ago
• royerlab / ultrack
  Cell tracking and segmentation software
  ☆93Updated this week
• maweigert / neubias_academy_stardist
  ☆28Updated 3 years ago
• HenriquesLab / DL4MicEverywhere
  Bringing the ZeroCostDL4Mic experience running everywhere via easy-to-install docker images
  ☆69Updated this week
• napari / cookiecutter-napari-plugin
  Cookiecutter for napari plugins
  ☆69Updated this week
• Kapoorlabs-CAPED / VollSeg
  Segmentation method able to detect membrane/nuclei-labelled cells with low signal-to-noise ratio and dense packing in 2D and 3D. Availabl…
  ☆33Updated this week
• neurobiology-ut / PHILOW
  Python-based Human-In-the-LOop Workflow: PHILOW is an interactive deep learning-based platform for 3D datasets
  ☆26Updated last week
• BiaPyX / BiaPy
  Open source Python library for building bioimage analysis pipelines
  ☆124Updated this week
• CellMigrationLab / Fast4DReg
  Fast4DReg is a Fiji script for quick drift correction in time-lapse 3D-stacks. The script can be used to correct drift in all x-, y- and/…
  ☆37Updated 2 weeks ago
• clEsperanto / napari_pyclesperanto_assistant
  GPU-accelerated general purpose image processing and image analysis in napari
  ☆34Updated 2 weeks ago
• stardist / stardist-napari
  StarDist plugin for napari
  ☆36Updated 2 months ago
• BiAPoL / napari-clusters-plotter
  A napari plugin for clustering objects according to their properties.
  ☆80Updated last week
• JaneliaSciComp / bigstream
  Tools for distributed alignment of massive images
  ☆74Updated 3 months ago
• AllenCell / aics-ml-segmentation
  ☆30Updated 2 years ago
• vanvalenlab / deepcell-tracking
  Track cells and build cell lineages
  ☆27Updated 3 months ago
• stardist / augmend
  simple package for augmentation of n-dimensional arrays
  ☆32Updated last year
• haesleinhuepf / napari-accelerated-pixel-and-object-classification
  GPU-accelerated, OpenCL-based Random Forest Classifiers for pixel and labeled object classification in napari.
  ☆43Updated last year
• aelefebv / nellie
  Nellie: Automated organelle segmentation, tracking, and hierarchical feature extraction in 2D/3D live-cell microscopy
  ☆33Updated last week
• fractal-napari-plugins-collection / napari-feature-classifier
  ☆21Updated last month
• haesleinhuepf / napari-workflow-optimizer
  Optimize image processing workflows in napari
  ☆17Updated 2 years ago
• haesleinhuepf / napari-skimage-regionprops
  Feature extraction for labeled objects in images using regionprops from scikit-image
  ☆47Updated last month
• CellMigrationLab / CellTracksColab
  A platform for compiling, analyzing, and exploring tracking data
  ☆41Updated last week
• AllenInstitute / aics-segmentation
  AICS Segmentation (One-Way) Mirror
  ☆45Updated 3 years ago
• SchmollerLab / Cell_ACDC
  A Python GUI-based framework for segmentation, tracking and cell cycle annotations of microscopy data
  ☆131Updated this week
• haesleinhuepf / napari-simpleitk-image-processing
  Process images using SimpleITK in napari
  ☆19Updated last month
• haesleinhuepf / napari-segment-blobs-and-things-with-membranes
  A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…
  ☆23Updated 2 weeks ago
• bioimage-io / bioimage.io
  Website for the BioImage Model zoo -- a model zoo for bioimage analysis.
  ☆55Updated this week