WenChentao / 3DeeCellTracker
A python algorithm for tracking cells in 3D time lapse images.
☆57Updated 2 weeks ago
Alternatives and similar repositories for 3DeeCellTracker:
Users that are interested in 3DeeCellTracker are comparing it to the libraries listed below
- Accelerated Pixel and Object Classifiers (APOC)☆57Updated 2 months ago
- 3D Extension of the Cellpose Algorithm by Stringer et al., 2021.☆34Updated 2 years ago
- Website for the BioImage Model zoo -- a model zoo for bioimage analysis.☆59Updated last month
- Bringing the ZeroCostDL4Mic experience running everywhere via easy-to-install docker images☆76Updated last month
- Tools for distributed alignment of massive images☆81Updated last week
- napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool☆52Updated 5 months ago
- Utils and convenience functions for large-scale bio-image analysis.☆54Updated 2 weeks ago
- Python-based Human-In-the-LOop Workflow: PHILOW is an interactive deep learning-based platform for 3D datasets☆26Updated 2 months ago
- Cell tracking and segmentation software☆109Updated last week
- Segmentation method able to detect membrane/nuclei-labelled cells with low signal-to-noise ratio and dense packing in 2D and 3D. Availabl…☆33Updated 2 weeks ago
- Track cells and build cell lineages☆33Updated 8 months ago
- ☆31Updated 2 years ago
- Feature extraction for labeled objects in images using regionprops from scikit-image☆50Updated 6 months ago
- MorphoFeatures code and data☆20Updated last year
- A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…☆26Updated 5 months ago
- StarDist plugin for napari☆38Updated 7 months ago
- ☆31Updated 4 years ago
- Fast4DReg is a Fiji script for quick drift correction in time-lapse 3D-stacks. The script can be used to correct drift in all x-, y- and/…☆39Updated 4 months ago
- ☆69Updated 2 months ago
- LSTree is a digital organoid and lineage tree extraction workflow for light sheet movies.☆18Updated last year
- GPU-accelerated, OpenCL-based Random Forest Classifiers for pixel and labeled object classification in napari.☆43Updated last year
- AICS Segmentation (One-Way) Mirror☆45Updated 4 years ago
- Cell tracker designed for tracking intestinal organoids☆21Updated last week
- Optimize image processing workflows in napari☆17Updated 2 years ago
- Track and lineage visualization with btrack and Napari☆45Updated 5 months ago
- A platform for compiling, analyzing, and exploring tracking data☆43Updated last month
- GPU-accelerated general purpose image processing and image analysis in napari☆35Updated 6 months ago
- Nellie: Automated organelle segmentation, tracking, and hierarchical feature extraction in 2D/3D live-cell microscopy☆62Updated 3 weeks ago
- A toolbox for registering / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.☆70Updated this week
- ☆23Updated this week