haesleinhuepf / apoc
Accelerated Pixel and Object Classifiers (APOC)
☆55Updated last month
Alternatives and similar repositories for apoc:
Users that are interested in apoc are comparing it to the libraries listed below
- ☆23Updated 6 months ago
- Fast4DReg is a Fiji script for quick drift correction in time-lapse 3D-stacks. The script can be used to correct drift in all x-, y- and/…☆39Updated 3 months ago
- Segmentation method able to detect membrane/nuclei-labelled cells with low signal-to-noise ratio and dense packing in 2D and 3D. Availabl…☆33Updated 3 months ago
- Process images using SimpleITK in napari☆20Updated 5 months ago
- A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…☆26Updated 4 months ago
- GPU-accelerated, OpenCL-based Random Forest Classifiers for pixel and labeled object classification in napari.☆43Updated last year
- Process and analyze surfaces using vedo in napari.☆23Updated 10 months ago
- A nextflow based tool that wraps bfconvert and bioformats2raw to convert image data collections to OME-TIFF and OME-Zarr, respectively, i…☆21Updated last week
- GPU-accelerated general purpose image processing and image analysis in napari☆35Updated 4 months ago
- A napari plugin for clustering objects according to their properties.☆82Updated this week
- StarDist plugin for napari☆37Updated 6 months ago
- Track and lineage visualization with btrack and Napari☆45Updated 4 months ago
- A toolbox for registering / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.☆67Updated last week
- Napari Visualization tool for Trackmate > 6.0 and bTrackmate XML files for 2/3D + time tracks. Available via pip package napatrackmater.☆16Updated last week
- Python-based Human-In-the-LOop Workflow: PHILOW is an interactive deep learning-based platform for 3D datasets☆26Updated last month
- Feature extraction for labeled objects in images using regionprops from scikit-image☆50Updated 5 months ago
- ☆21Updated last year
- Optimize image processing workflows in napari☆17Updated 2 years ago
- Python module for registering and fusing multi-view microscopy data☆23Updated last week
- SplineDist: Automated Cell Segmentation with Spline Curves☆67Updated 5 months ago
- napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool☆52Updated 4 months ago
- Fast writing of numpy 3d-arrays into HDF5 Fiji/BigDataViewer files.☆35Updated 6 months ago
- ZELDA: a 3D Image Segmentation and Parent to Child relation plugin for microscopy image analysis in napari☆20Updated 3 months ago
- Visualizing feature measurements on label images in napari☆10Updated 7 months ago
- Benchmarking Large Language Models for Bio-Image Analysis Code Generation☆23Updated 4 months ago
- Python wrapper for cudaDecon - GPU accelerated 3D deconvolution for microscopy☆63Updated 2 weeks ago
- Deep Learning segmentation suite designed for 2D microscopy image segmentation☆9Updated 3 years ago
- PoL Bioimage Analysis Training School: GPU-Accelerated Image Analysis Track☆25Updated 9 months ago
- MiC is an ImageJ plugin to compare segmentation masks☆17Updated 8 months ago
- some useful function to get Label from ROIs and vice versa , and more!☆12Updated last year