Track and lineage visualization with btrack and Napari
☆45Sep 29, 2025Updated 5 months ago
Alternatives and similar repositories for arboretum
Users that are interested in arboretum are comparing it to the libraries listed below
Sorting:
- Bayesian multi-object tracking☆331Jan 9, 2026Updated last month
- python tools for BigDataViewer☆22Dec 29, 2024Updated last year
- Linking napari layers with Matplotlib plots☆43Feb 2, 2026Updated last month
- napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool☆63Oct 27, 2024Updated last year
- A napari plugin for stitching large multi-positioning datasets in 2/3D+t using multiview-stitcher☆17Jul 7, 2025Updated 7 months ago
- ☆18Oct 12, 2019Updated 6 years ago
- Cell tracking using TensorFlow and BayesianTracker☆22Jan 17, 2022Updated 4 years ago
- A self-supervised denoising algorithm.☆28Apr 6, 2024Updated last year
- scalable multiscale image pyramids in python☆29Jul 25, 2024Updated last year
- Jupyter notebooks for deep lineage analysis of single-cell heterogeneity and cell cycling duration heritability.☆30Sep 17, 2020Updated 5 years ago
- Prototype implementation of napari-integrated CNN training viewer☆14Dec 27, 2024Updated last year
- Speed up coding/extending image analysis in Python.☆37Jan 20, 2026Updated last month
- Process and analyze surfaces using vedo in napari.☆25May 13, 2024Updated last year
- A napari plugin for making animations☆95Feb 1, 2026Updated last month
- ☆13Nov 24, 2025Updated 3 months ago
- ☆13Apr 27, 2020Updated 5 years ago
- Efficient graph data structures and algorithms for fast slicing, visualization, and editing☆13Dec 1, 2025Updated 3 months ago
- 4D reconstruction of developmental trajectories using spherical harmonics☆23Mar 25, 2025Updated 11 months ago
- Process images using SimpleITK in napari☆23May 1, 2025Updated 10 months ago
- A python algorithm for tracking cells in 3D deforming organs☆68Nov 13, 2025Updated 3 months ago
- Particle tracking by solving linear assignment problem.☆62Updated this week
- A napari plugin for clustering objects according to their properties.☆90Feb 23, 2026Updated last week
- Python package for optical flow estimation☆15Dec 25, 2022Updated 3 years ago
- StarDist plugin for napari☆38Aug 24, 2024Updated last year
- SplineDist: Automated Cell Segmentation with Spline Curves☆70Sep 29, 2024Updated last year
- Accelerated Pixel and Object Classifiers (APOC)☆60Jul 18, 2025Updated 7 months ago
- GPU-accelerated, OpenCL-based Random Forest Classifiers for pixel and labeled object classification in napari.☆45May 1, 2025Updated 10 months ago
- ilastik plugin for napari☆14Dec 15, 2025Updated 2 months ago
- A module with convenience functions for writing Python code that interacts with OMERO.☆46Dec 4, 2025Updated 3 months ago
- Napari plugin for custom analysis and visualization of lattice lightsheet and Oblique Plane Microscopy data. The plugin is optimized for …☆14Feb 4, 2026Updated last month
- ☆38Dec 5, 2025Updated 3 months ago
- 1d plotting in napari-based canvas.☆25Feb 23, 2026Updated last week
- A plugin to read whole slide images within napari.☆21Nov 24, 2025Updated 3 months ago
- A napari plugin to load & deskew folders of lattice light sheet TIFFs☆13Jan 5, 2026Updated 2 months ago
- ☆15Jul 29, 2022Updated 3 years ago
- Multiple file format reading directly into napari using pure Python☆39Oct 15, 2025Updated 4 months ago
- Python image segmentation plugin☆31Jan 13, 2021Updated 5 years ago
- Segment images utilizing pre-trained neural networks as feature extractors☆47Feb 25, 2026Updated last week
- CUDA-accelerated 3D BioImage Computing (ICCV BIC 2025)☆27Updated this week