stardist / augmendLinks
simple package for augmentation of n-dimensional arrays
☆34Updated 2 years ago
Alternatives and similar repositories for augmend
Users that are interested in augmend are comparing it to the libraries listed below
Sorting:
- ☆24Updated 5 years ago
- Accelerated Pixel and Object Classifiers (APOC)☆59Updated 5 months ago
- SplineDist: Automated Cell Segmentation with Spline Curves☆69Updated last year
- 3D Extension of the Cellpose Algorithm by Stringer et al., 2021.☆35Updated 3 years ago
- ☆32Updated 5 months ago
- Python-based Human-In-the-LOop Workflow: PHILOW is an interactive deep learning-based platform for 3D datasets☆27Updated 10 months ago
- Official implementation of "A novel deep learning-based 3D cell segmentation framework for future image-based disease detection". (Howeve…☆22Updated 2 years ago
- Utils and convenience functions for large-scale bio-image analysis.☆58Updated 2 weeks ago
- Python package for deep learning based image to image transformation☆53Updated last month
- napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool☆61Updated last year
- Please go to https://github.com/CRBS/cdeep3m2 for most recent version☆59Updated 5 years ago
- 3D shape analysis using deep learning☆28Updated 2 months ago
- MorphoFeatures code and data☆22Updated 2 years ago
- A python algorithm for tracking cells in 3D deforming organs☆65Updated last month
- StarDist plugin for napari☆38Updated last year
- Website for the BioImage Model zoo -- a model zoo for bioimage analysis.☆60Updated 6 months ago
- Python module for registering and fusing multi-view microscopy data☆24Updated 9 months ago
- GPU-accelerated, OpenCL-based Random Forest Classifiers for pixel and labeled object classification in napari.☆45Updated 7 months ago
- Visualizing feature measurements on label images in napari☆10Updated last year
- ZetaStitcher is a tool designed to stitch large volumetric images such as those produced by Light-Sheet Fluorescence Microscopes.☆46Updated last month
- MultiModal Big Image Data Sharing and Exploration☆18Updated 2 years ago
- Optimize image processing workflows in napari☆17Updated 7 months ago
- Deep Learning segmentation suite designed for 2D microscopy image segmentation☆10Updated 4 years ago
- Napari Visualization tool for Trackmate > 6.0 XML files for 2/3D + time tracks. Available via pip package napatrackmater.☆18Updated 2 months ago
- Convolutional Neural Network-Based Instance Segmentation Algorithm to Acquire Quantitative Criteria of Early Mouse Development☆32Updated 2 years ago
- ☆31Updated 4 years ago
- ☆14Updated 10 months ago
- ☆22Updated 6 months ago
- Lazily load multiscale whole-slide images with openslide and dask☆34Updated 3 years ago
- QuPath extension for Cellsparse☆19Updated 7 months ago