stardist / augmendLinks
simple package for augmentation of n-dimensional arrays
☆33Updated 2 years ago
Alternatives and similar repositories for augmend
Users that are interested in augmend are comparing it to the libraries listed below
Sorting:
- ☆25Updated 5 years ago
- Accelerated Pixel and Object Classifiers (APOC)☆56Updated 2 months ago
- SplineDist: Automated Cell Segmentation with Spline Curves☆68Updated 11 months ago
- Python-based Human-In-the-LOop Workflow: PHILOW is an interactive deep learning-based platform for 3D datasets☆26Updated 7 months ago
- 3D Extension of the Cellpose Algorithm by Stringer et al., 2021.☆35Updated 2 years ago
- Python package for deep learning based image to image transformation☆53Updated 3 weeks ago
- napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool☆55Updated 10 months ago
- ☆32Updated last month
- GPU-accelerated image processing in QuPath☆15Updated 3 years ago
- Convolutional Neural Network-Based Instance Segmentation Algorithm to Acquire Quantitative Criteria of Early Mouse Development☆31Updated 2 years ago
- 3D shape analysis using deep learning☆27Updated last year
- Piecewise alignment for layers of mosaics☆29Updated 2 weeks ago
- GPU-accelerated, OpenCL-based Random Forest Classifiers for pixel and labeled object classification in napari.☆44Updated 4 months ago
- QuPath extension for Cellsparse☆19Updated 4 months ago
- Napari Visualization tool for Trackmate > 6.0 XML files for 2/3D + time tracks. Available via pip package napatrackmater.☆17Updated last month
- ☆31Updated 4 years ago
- Utils and convenience functions for large-scale bio-image analysis.☆58Updated last month
- MorphoFeatures code and data☆22Updated 2 years ago
- Notebooks for VoidSeg☆17Updated 5 years ago
- StarDist plugin for napari☆39Updated last year
- Python module for registering and fusing multi-view microscopy data☆23Updated 6 months ago
- Lazily load multiscale whole-slide images with openslide and dask☆33Updated 2 years ago
- Official implementation of "A novel deep learning-based 3D cell segmentation framework for future image-based disease detection". (Howeve…☆22Updated 2 years ago
- Repo for the CZI Imaging Team's napari plugin Alfa Cohort collaboration☆11Updated 4 years ago
- MultiModal Big Image Data Sharing and Exploration☆17Updated 2 years ago
- Transformer-based cell tracking for live-cell microscopy☆91Updated this week
- Distributed segmentation for bio-image-analysis☆38Updated 4 months ago
- Optimize image processing workflows in napari☆18Updated 4 months ago
- Visualizing feature measurements on label images in napari☆10Updated last year
- Track and lineage visualization with btrack and Napari