stardist / augmend
simple package for augmentation of n-dimensional arrays
☆32Updated last year
Alternatives and similar repositories for augmend:
Users that are interested in augmend are comparing it to the libraries listed below
- ☆31Updated 2 years ago
- Part 1 of Allen Cell and Structure Segmenter: classic image segmentation workflow☆28Updated 7 months ago
- Official implementation of "A novel deep learning-based 3D cell segmentation framework for future image-based disease detection". (Howeve…☆21Updated last year
- ☆25Updated 4 years ago
- Python package for deep learning based image to image transformation☆51Updated 9 months ago
- Accelerated Pixel and Object Classifiers (APOC)☆55Updated last month
- 3D Extension of the Cellpose Algorithm by Stringer et al., 2021.☆33Updated 2 years ago
- MorphoFeatures code and data☆20Updated last year
- Python-based Human-In-the-LOop Workflow: PHILOW is an interactive deep learning-based platform for 3D datasets☆26Updated last month
- SplineDist: Automated Cell Segmentation with Spline Curves☆67Updated 5 months ago
- Unsupervised Instance Segmentation in Microscopy☆21Updated 11 months ago
- Panoptic segmentation algorithms for 2D and 3D electron microscopy images☆2Updated 2 years ago
- Utils and convenience functions for large-scale bio-image analysis.☆53Updated last month
- napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool☆52Updated 4 months ago
- QuPath extension for Cellsparse☆18Updated 3 months ago
- ☆31Updated 3 years ago
- GPU-accelerated, OpenCL-based Random Forest Classifiers for pixel and labeled object classification in napari.☆43Updated last year
- Convolutional Neural Network-Based Instance Segmentation Algorithm to Acquire Quantitative Criteria of Early Mouse Development☆31Updated last year
- Deep Learning segmentation suite designed for 2D microscopy image segmentation☆9Updated 3 years ago
- Segmentation method able to detect membrane/nuclei-labelled cells with low signal-to-noise ratio and dense packing in 2D and 3D. Availabl…☆33Updated 3 months ago
- GPU-accelerated image processing in QuPath☆15Updated 3 years ago
- Notebooks for VoidSeg☆16Updated 5 years ago
- Optimize image processing workflows in napari☆17Updated 2 years ago
- Napari Visualization tool for Trackmate > 6.0 and bTrackmate XML files for 2/3D + time tracks. Available via pip package napatrackmater.☆16Updated last week
- PyTorch implementation of 2D and 3D StarDist - Object Detection with Star-convex Shapes☆22Updated 2 years ago
- A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…☆26Updated 4 months ago
- Visualizing feature measurements on label images in napari☆10Updated 7 months ago
- Lazily load multiscale whole-slide images with openslide and dask☆33Updated 2 years ago
- StarDist plugin for napari☆37Updated 6 months ago
- Easy Volumetric Segmentation with Deep Learning☆24Updated 3 weeks ago