A collection of Image Processing and Analysis (IPA) functions used at the Facility for Advanced Imaging and Microscopy (FAIM)
☆20Oct 12, 2026Updated this week
Alternatives and similar repositories for faim-ipa
Users that are interested in faim-ipa are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ngio is a Python library to streamline OME-Zarr image analysis workflows.☆53Updated this week
- Basic example of using OME-Zarr in a Nextflow pipeline☆21Jul 15, 2025Updated last year
- GIve easy, high-level access to ome-zarr fileset☆24Sep 22, 2025Updated last year
- Pydantic models for OME-NGFF☆24Sep 14, 2025Updated last year
- ☆45Sep 28, 2026Updated 2 weeks ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- A stable diffusion demo for napari☆11Jun 7, 2026Updated 4 months ago
- GPU-accelerated Image Processing library for C++☆16Updated this week
- Generate a multiscale, chunked, multi-dimensional spatial image data structure that can serialized to OME-NGFF.☆58Nov 13, 2025Updated 11 months ago
- A place to collect information used in lectures, demos, workshops, etc.☆17Sep 26, 2024Updated 2 years ago
- A minimal Python package for reading, writing and validating OME-Zarr (meta)data☆39Oct 10, 2026Updated last week
- PoL Bioimage Analysis Training School: GPU-Accelerated Image Analysis Track☆28Jun 5, 2024Updated 2 years ago
- 4D reconstruction of developmental trajectories using spherical harmonics☆23Mar 25, 2025Updated last year
- A basis for a napari plugin for manually correcting cell segmentation in 3D (z, y, x) or 4D (t, z, y, x) (virtual) arrays.☆10Mar 6, 2026Updated 7 months ago
- A napari plugin for zarr backed OME-NGFF images☆56Updated this week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Efficient graph data structures and algorithms for fast slicing, visualization, and editing☆13Jul 1, 2026Updated 3 months ago
- A napari plugin for stitching large multi-positioning datasets in 2/3D+t using multiview-stitcher☆19Jul 26, 2026Updated 2 months ago
- Image reading, metadata management, and image writing for Microscopy images in Python☆132Sep 30, 2026Updated 2 weeks ago
- ilastik plugin for napari☆15Mar 2, 2026Updated 7 months ago
- Project planning and material repository for the 2024 challenge to generate 1 PB of OME-Zarr data☆21May 11, 2026Updated 5 months ago
- Napari plugin for custom analysis and visualization of lattice lightsheet and Oblique Plane Microscopy data. The plugin is optimized for …☆19Oct 7, 2026Updated last week
- Official implementation of MuViT (CVPR 2026), a ViT-based architecture for multi-scale modelling of gigapixel microscopy images.☆49Jun 7, 2026Updated 4 months ago
- A Python toolbox for aligning / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.☆135Sep 6, 2026Updated last month
- A nextflow based tool that wraps bfconvert and bioformats2raw to convert image data collections to OME-TIFF and OME-Zarr, respectively, i…☆31Mar 14, 2025Updated last year
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- ☆14May 17, 2024Updated 2 years ago
- A dataset for loading zarr files to be used in machine learning training pipelines☆37Jan 5, 2026Updated 9 months ago
- GPU-accelerated Image Processing library for Python☆65Updated this week
- FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets☆31Updated this week
- Automated batch processing of cell and tissue microscopy image data in Napari☆23Oct 1, 2026Updated 2 weeks ago
- SplineDist: Automated Cell Segmentation with Spline Curves☆74Sep 29, 2024Updated 2 years ago
- SciCount is tool focused on counting and classifying of objects in image-like data and scientific images, with training and example datas…☆11Oct 24, 2023Updated 2 years ago
- A napari plugin for making image annotation using feature space of vision transformers and Random Forest classifier☆23Nov 24, 2025Updated 10 months ago
- napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool☆67Oct 27, 2024Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A framework for easy application of established machine learning techniques on large, multi-dimensional images.☆61Apr 24, 2026Updated 5 months ago
- ☆22Updated this week
- Block-wise operations for large nD volumes☆45Updated this week
- A minimalistic napari plugin to create and save regions of interest and annotations on series of images☆19Apr 8, 2025Updated last year
- A minimal dependency napari plugin giving access to scikit-image functions☆25Oct 5, 2026Updated last week
- Java implementation of Appose ☕☆15Oct 9, 2026Updated last week
- Interprocess environment manager 🧊☆18Oct 9, 2026Updated last week