A collection of Image Processing and Analysis (IPA) functions used at the Facility for Advanced Imaging and Microscopy (FAIM)
☆20May 1, 2026Updated last week
Alternatives and similar repositories for faim-ipa
Users that are interested in faim-ipa are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- GIve easy, high-level access to ome-zarr fileset☆22Sep 22, 2025Updated 7 months ago
- Basic example of using OME-Zarr in a Nextflow pipeline☆21Jul 15, 2025Updated 9 months ago
- A stable diffusion demo for napari☆11Dec 15, 2023Updated 2 years ago
- Efficient graph data structures and algorithms for fast slicing, visualization, and editing☆13May 1, 2026Updated last week
- ☆42May 1, 2026Updated last week
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Generate a multiscale, chunked, multi-dimensional spatial image data structure that can serialized to OME-NGFF.☆55Nov 13, 2025Updated 5 months ago
- ilastik plugin for napari☆15Mar 2, 2026Updated 2 months ago
- Pydantic models for OME-NGFF☆24Sep 14, 2025Updated 7 months ago
- A napari plugin for zarr backed OME-NGFF images☆50Apr 27, 2026Updated last week
- ☆14May 17, 2024Updated last year
- A dataset for loading zarr files to be used in machine learning training pipelines☆36Jan 5, 2026Updated 4 months ago
- 4D reconstruction of developmental trajectories using spherical harmonics☆23Mar 25, 2025Updated last year
- Napari plugin for custom analysis and visualization of lattice lightsheet and Oblique Plane Microscopy data. The plugin is optimized for …☆14Apr 13, 2026Updated 3 weeks ago
- napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool☆63Oct 27, 2024Updated last year
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- GPU-accelerated Image Processing library for C++☆16Apr 27, 2026Updated last week
- SciCount is tool focused on counting and classifying of objects in image-like data and scientific images, with training and example datas…☆11Oct 24, 2023Updated 2 years ago
- Block-wise operations for large nD volumes☆45Updated this week
- ☆20Apr 27, 2026Updated last week
- A framework for easy application of established machine learning techniques on large, multi-dimensional images.☆60Apr 24, 2026Updated 2 weeks ago
- A place to collect information used in lectures, demos, workshops, etc.☆17Sep 26, 2024Updated last year
- A basis for a napari plugin for manually correcting cell segmentation in 3D (z, y, x) or 4D (t, z, y, x) (virtual) arrays.☆10Mar 6, 2026Updated 2 months ago
- ☆19Apr 30, 2026Updated last week
- ☆13Aug 16, 2024Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆21Apr 3, 2026Updated last month
- Image reading, metadata management, and image writing for Microscopy images in Python☆123May 1, 2026Updated last week
- Project planning and material repository for the 2024 challenge to generate 1 PB of OME-Zarr data☆21Apr 16, 2026Updated 3 weeks ago
- Process and analyze surfaces using vedo in napari.☆25May 13, 2024Updated last year
- Accelerated Pixel and Object Classifiers (APOC)☆62Apr 24, 2026Updated 2 weeks ago
- BIOMERO.analyzer - A python library for easy connecting between OMERO (jobs) and a Slurm cluster☆28Updated this week
- native Python dataclasses for the OME data model☆65Apr 2, 2026Updated last month
- SplineDist: Automated Cell Segmentation with Spline Curves☆72Sep 29, 2024Updated last year
- This repository contains the materials for the University of Oxford DTC ONBI Image Analysis course☆18Oct 30, 2017Updated 8 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- 3D shape analysis using deep learning☆31Oct 8, 2025Updated 7 months ago
- Robust and unbiased estimation of the background distribution for fluorescence microscopy.☆13Oct 13, 2025Updated 6 months ago
- Implementation of next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.☆238Apr 30, 2026Updated last week
- A napari Plugin for visualisaton of pixel values over time (t+ nD) as graphs.☆14Apr 24, 2024Updated 2 years ago
- ngio is a Python library to streamline OME-Zarr image analysis workflows.☆48Apr 27, 2026Updated last week
- Most of us study and work at the Bio-image Analysis Technology Development group at the DFG Cluster of Excellence “Physics of Life” at th…☆16Jun 27, 2025Updated 10 months ago
- dask empowered fast4dreg☆16Mar 11, 2026Updated last month