A collection of Image Processing and Analysis (IPA) functions used at the Facility for Advanced Imaging and Microscopy (FAIM)
☆20Jun 29, 2026Updated last week
Alternatives and similar repositories for faim-ipa
Users that are interested in faim-ipa are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- GIve easy, high-level access to ome-zarr fileset☆24Sep 22, 2025Updated 9 months ago
- Basic example of using OME-Zarr in a Nextflow pipeline☆21Jul 15, 2025Updated 11 months ago
- A stable diffusion demo for napari☆11Jun 7, 2026Updated last month
- Efficient graph data structures and algorithms for fast slicing, visualization, and editing☆13Jul 1, 2026Updated last week
- ☆44Jun 24, 2026Updated 2 weeks ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Generate a multiscale, chunked, multi-dimensional spatial image data structure that can serialized to OME-NGFF.☆56Nov 13, 2025Updated 7 months ago
- ilastik plugin for napari☆15Mar 2, 2026Updated 4 months ago
- Pydantic models for OME-NGFF☆24Sep 14, 2025Updated 9 months ago
- A napari plugin for zarr backed OME-NGFF images☆52May 28, 2026Updated last month
- ☆14May 17, 2024Updated 2 years ago
- A dataset for loading zarr files to be used in machine learning training pipelines☆37Jan 5, 2026Updated 6 months ago
- 4D reconstruction of developmental trajectories using spherical harmonics☆23Mar 25, 2025Updated last year
- Napari plugin for custom analysis and visualization of lattice lightsheet and Oblique Plane Microscopy data. The plugin is optimized for …☆15Updated this week
- napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool☆65Oct 27, 2024Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- GPU-accelerated Image Processing library for C++☆16Jun 29, 2026Updated last week
- SciCount is tool focused on counting and classifying of objects in image-like data and scientific images, with training and example datas…☆11Oct 24, 2023Updated 2 years ago
- Block-wise operations for large nD volumes☆45Jun 10, 2026Updated 3 weeks ago
- ☆22May 25, 2026Updated last month
- A framework for easy application of established machine learning techniques on large, multi-dimensional images.☆60Apr 24, 2026Updated 2 months ago
- A place to collect information used in lectures, demos, workshops, etc.☆17Sep 26, 2024Updated last year
- A basis for a napari plugin for manually correcting cell segmentation in 3D (z, y, x) or 4D (t, z, y, x) (virtual) arrays.☆10Mar 6, 2026Updated 4 months ago
- ☆20Jun 29, 2026Updated last week
- ☆13Aug 16, 2024Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Interprocess environment manager 🧊☆15May 11, 2026Updated last month
- ☆21Jun 16, 2026Updated 3 weeks ago
- Image reading, metadata management, and image writing for Microscopy images in Python☆127Jul 1, 2026Updated last week
- Project planning and material repository for the 2024 challenge to generate 1 PB of OME-Zarr data☆21May 11, 2026Updated last month
- Process and analyze surfaces using vedo in napari.☆25May 13, 2024Updated 2 years ago
- Accelerated Pixel and Object Classifiers (APOC)☆62Apr 24, 2026Updated 2 months ago
- BIOMERO.analyzer - A python library for easy connecting between OMERO (jobs) and a Slurm cluster☆28Updated this week
- SplineDist: Automated Cell Segmentation with Spline Curves☆74Sep 29, 2024Updated last year
- This repository contains the materials for the University of Oxford DTC ONBI Image Analysis course☆18Oct 30, 2017Updated 8 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- native Python dataclasses for the OME data model☆67Apr 2, 2026Updated 3 months ago
- 3D shape analysis using deep learning☆31Oct 8, 2025Updated 9 months ago
- Robust and unbiased estimation of the background distribution for fluorescence microscopy.☆13Oct 13, 2025Updated 8 months ago
- Implementation of next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.☆245Jul 1, 2026Updated last week
- A napari Plugin for visualisaton of pixel values over time (t+ nD) as graphs.☆14Apr 24, 2024Updated 2 years ago
- ngio is a Python library to streamline OME-Zarr image analysis workflows.☆50Updated this week
- dask empowered fast4dreg☆17Mar 11, 2026Updated 3 months ago