nigyta / dfast_coreLinks
DDBJ Fast Annotation and Submission Tool
☆79Updated 2 months ago
Alternatives and similar repositories for dfast_core
Users that are interested in dfast_core are comparing it to the libraries listed below
Sorting:
- A toolbox for comparative genomics.☆104Updated 4 years ago
- A python pipeline to identify IS (Insertion Sequence) elements in genome and metagenome☆96Updated 3 months ago
- Classification of Eukaryotic and Prokaryotic sequences from metagenomic datasets☆72Updated last year
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆70Updated 3 years ago
- A tool for drawing ANI clustermap between all-vs-all microbial genomes☆84Updated 2 months ago
- IS mapping software☆54Updated 3 years ago
- OPERA-MS - Hybrid Metagenomic Assembler☆95Updated last year
- PANgenome with Annotations, COre identification, Tree and corresponding Alignments☆74Updated last year
- Development version of Easyfig☆98Updated last year
- A tool for classifying prokaryote protein sequences into COG(Cluster of Orthologous Genes) functional category☆67Updated 2 months ago
- Long-read mock community experiments☆105Updated 3 years ago
- Assembly methods for nanopore-based metagenomic sequencing: a comparative study☆18Updated 5 years ago
- a collection of scripts for organising bacterial genomes by species☆76Updated 3 years ago
- All of my various bioinformatic scripts fit for public consumption (loosely defining "fit")☆75Updated 2 years ago
- A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.☆122Updated last year
- Interactive quality assessment of genome assemblies☆102Updated 2 months ago
- Reorients assembled microbial sequences☆121Updated 3 months ago
- GTDB taxonomy taxdump files with trackable TaxIds☆55Updated 2 months ago
- A tool for generating consensus long-read assemblies for bacterial genomes☆153Updated last week
- Insertion sequences (Insertion Element) [https://en.wikipedia.org/wiki/Insertion_sequence] collected from ISfinder (https://isfinder.biot…☆68Updated 4 years ago
- ☆83Updated last year
- Prediction of prophages from bacterial genomes☆78Updated last month
- Parsnp was designed to align the core genome of hundreds to thousands of bacterial genomes within a few minutes to few hours. Input can b…☆145Updated 2 months ago
- ClonalFrameML: Efficient Inference of Recombination in Whole Bacterial Genomes☆115Updated last year
- A pipeline for running AMRfinderPlus and collating results into functional classes☆79Updated 10 months ago
- Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.☆131Updated 2 months ago
- Perl script for simulating PCR reactions. Extract sequences from a query based on primer sequences.☆47Updated 3 months ago
- Bash pipeline for analysis of ONT full-length 16S sequences in QIIME2☆30Updated 5 years ago
- Sorts amplicons from Nanopore sequencing data based on similarity☆38Updated last month
- GET_HOMOLOGUES: a versatile software package for pan-genome analysis☆116Updated 3 weeks ago