DDBJ Fast Annotation and Submission Tool
☆86Oct 23, 2026Updated last week
Alternatives and similar repositories for dfast_core
Users that are interested in dfast_core are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Pan-genome wide association studies☆228May 29, 2024Updated 2 years ago
- Making whole bacterial genome sequencing data analysis easy☆116Apr 22, 2025Updated last year
- Microbial RNA annotation☆320Apr 12, 2026Updated 6 months ago
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆692Oct 11, 2026Updated 3 weeks ago
- An automated assembly pipeline for microbial genomes☆19Aug 26, 2026Updated 2 months ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Pipeline for metabolic annotation of microbial genomes☆154Mar 20, 2025Updated last year
- Interactive, web tool for exploring pan-genome of bacterial strains☆50Jan 14, 2026Updated 9 months ago
- Rapid large-scale prokaryote pan genome analysis☆381Nov 3, 2025Updated last year
- Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins☆226Oct 7, 2026Updated 3 weeks ago
- A toolbox for pangenome analysis and threshold evaluation.☆103Jul 8, 2022Updated 4 years ago
- A random forest classifier to identify contigs of plasmid origin in contig and scaffold genomes☆23Apr 20, 2023Updated 3 years ago
- Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes☆412Mar 2, 2026Updated 8 months ago
- A toolbox for comparative genomics.☆110May 26, 2021Updated 5 years ago
- Gene Absence Presence Identification tool.☆27Mar 28, 2025Updated last year
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- An updated pipeline for pangenome investigation☆379Oct 26, 2026Updated last week
- Rapid prokaryotic genome annotation☆998Jan 6, 2026Updated 9 months ago
- Rapid haploid variant calling and core genome alignment☆596Dec 12, 2025Updated 10 months ago
- Rapid determination of appropriate reference genomes.☆103Jan 22, 2025Updated last year
- ☆16Jun 30, 2021Updated 5 years ago
- A pipeline for bioinformatics analysis of bacterial genomes☆33Oct 5, 2026Updated 3 weeks ago
- Masks recombination as detected by ClonalFrameML or Gubbins and draws an SVG☆21Feb 15, 2019Updated 7 years ago
- Run_dbcan V4, using genomes/metagenomes/proteomes of any assembled organisms (prokaryotes, fungi, plants, animals, viruses) to search for…☆170Apr 23, 2025Updated last year
- Insertion sequences (Insertion Element) [https://en.wikipedia.org/wiki/Insertion_sequence] collected from ISfinder (https://isfinder.biot…☆75Oct 6, 2020Updated 6 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ClonalFrameML: Efficient Inference of Recombination in Whole Bacterial Genomes☆130Jun 2, 2026Updated 5 months ago
- Fast Whole-Genome Similarity (ANI) Estimation☆486Sep 14, 2026Updated last month
- In silico multi-antigen sequence typing for Neisseria gonorrhoeae (NG-MAST)☆10Jun 17, 2026Updated 4 months ago
- AMRFinderPlus - Identify AMR genes and point mutations, and virulence and stress resistance genes in assembled bacterial nucleotide and p…☆391Updated this week
- post processing of bacterial pangenome gene presence/absence matrices☆68Jan 19, 2026Updated 9 months ago
- A scalable bacterial genome assembly, annotation and analysis pipeline☆80Dec 5, 2023Updated 2 years ago
- Estimate metagenomic coverage and sequence diversity☆64Aug 5, 2026Updated 2 months ago
- ⚡♠️ Assemble bacterial isolate genomes from Illumina paired-end reads☆271Jun 11, 2026Updated 4 months ago
- Masks recombinant regions in an alignment based on ClonalFrameML output☆10May 18, 2018Updated 8 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Mass screening of contigs for antimicrobial and virulence genes☆517Jul 17, 2026Updated 3 months ago
- GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.☆628Oct 20, 2026Updated 2 weeks ago
- A tool to circularize genome assemblies☆258Apr 6, 2024Updated 2 years ago
- Processing pipeline for pan-genome visulization and exploration☆147Oct 9, 2023Updated 3 years ago
- Create your own PanViz visualizations☆21Nov 20, 2017Updated 8 years ago
- hybrid assembly pipeline for bacterial genomes☆656Jul 29, 2026Updated 3 months ago
- ☆15Apr 19, 2018Updated 8 years ago