quick-lab / SARS-CoV-2
SARs-CoV-2 Primer schemes
☆15Updated 2 years ago
Alternatives and similar repositories for SARS-CoV-2:
Users that are interested in SARS-CoV-2 are comparing it to the libraries listed below
- Phylogenetic maximum representation sampling: choosing most representative strains or taxa☆37Updated last week
- Automated Pipeline to Generate FTP Files and Manage Submission of Sequence Data to Public Repositories☆36Updated this week
- ☆17Updated 10 months ago
- CFSAN Shigella Typing Pipeline☆14Updated last year
- Strip reads from Oxford Nanopore FAST5 files if they meet certain criteria☆14Updated 3 years ago
- Influenza genome analysis Nextflow workflow☆22Updated 2 weeks ago
- Main development repository for SpreadGL☆18Updated 6 months ago
- An `R` package for various phylogenetic and evolutionary biology data manipulations☆12Updated 7 years ago
- Systematic ProtEin AnnotatoR☆19Updated 6 months ago
- VarSkip multiplex PCR designs for SARS-CoV-2 sequencing☆14Updated 2 years ago
- Intra-species bacterial contamination detection☆25Updated 2 months ago
- Output FASTQ summary statistics in JSON format☆29Updated 2 years ago
- UPHL's Reference Free Pipeline☆26Updated last week
- ASMNGS20 - 2020 Conference Details☆15Updated 2 years ago
- ☆26Updated last year
- Influenza data pipeline to automate genotyping assignment☆31Updated 2 months ago
- Collection of R scripts for SARS-CoV-2 (variant) analyses☆12Updated 2 years ago
- Read contamination removal☆25Updated last year
- Remove human reads from a sequencing run☆40Updated 6 months ago
- Mandrake 🌿/👨🔬🦆 – Fast visualisation of the population structure of pathogens using Stochastic Cluster Embedding☆36Updated last month
- Assign genotypes to Salmonella Typhi genomes based on VCF files (mapped to Typhi CT18 reference genome)☆24Updated 6 months ago
- A surveillance-oriented tool to strengthen the linkage between pathogen genetic clusters and epidemiological data☆32Updated 4 months ago
- Reproducible workflow for SARS-CoV-2 recombinant sequence detection.☆18Updated last year
- In silico serotyping, finetyping and Bexsero antigen sequence typing of Neisseria meningitidis☆12Updated 2 months ago
- 🍊 💫 Trim, circularise and orient long read bacterial genome assemblies☆26Updated 5 years ago
- Genome size estimation from long read overlaps☆52Updated last week
- Assembly based core genome SNP alignments for bacteria☆25Updated 5 years ago
- Evaluating Nanopore-based bacterial variant calling☆18Updated 4 months ago
- NCBI Pathogen Detection Portal toolkit☆11Updated last year
- Find Unique genomic Regions☆29Updated 3 weeks ago