quick-lab / SARS-CoV-2
SARs-CoV-2 Primer schemes
☆15Updated last year
Related projects ⓘ
Alternatives and complementary repositories for SARS-CoV-2
- Phylogenetic maximum representation sampling: choosing most representative strains or taxa☆29Updated last month
- A surveillance-oriented tool to strengthen the linkage between pathogen genetic clusters and epidemiological data☆29Updated last month
- ☆17Updated 5 months ago
- CFSAN Shigella Typing Pipeline☆14Updated last year
- Strip reads from Oxford Nanopore FAST5 files if they meet certain criteria☆14Updated 3 years ago
- Assembly based core genome SNP alignments for bacteria☆25Updated 5 years ago
- Influenza genome analysis Nextflow workflow☆22Updated 2 weeks ago
- UPHL's Reference Free Pipeline☆25Updated 2 weeks ago
- Systematic ProtEin AnnotatoR☆19Updated last month
- Automated Pipeline to Generate FTP Files and Manage Submission of Sequence Data to Public Repositories☆32Updated last week
- ☆27Updated last year
- Output FASTQ summary statistics in JSON format☆29Updated 2 years ago
- An `R` package for various phylogenetic and evolutionary biology data manipulations☆12Updated 6 years ago
- Assign genotypes to Salmonella Typhi genomes based on VCF files (mapped to Typhi CT18 reference genome)☆22Updated last month
- Influenza data pipeline to automate genotyping assignment☆22Updated 3 weeks ago
- Intra-species bacterial contamination detection☆22Updated this week
- Read contamination removal☆24Updated 9 months ago
- TAXnomic Profile Aggregation and STAndardisation☆34Updated 3 weeks ago
- VIRULIGN: fast codon-correct alignment and annotation of viral genomes☆31Updated 3 years ago
- 🍊 💫 Trim, circularise and orient long read bacterial genome assemblies☆25Updated 5 years ago
- VGEA (Viral Genomes Easily Analyzed) is a pipeline for analysis of RNA virus next-generation sequencing data.☆19Updated 3 years ago
- 🐻⇔🐨 Calculate distance matrix from ChewBBACA cgMLST allele call tables☆27Updated last year
- Masks recombination as detected by ClonalFrameML or Gubbins and draws an SVG☆19Updated 5 years ago
- A method of assessing sequence complexity based on kmer frequencies☆28Updated 6 years ago
- NCBI Pathogen Detection Portal toolkit☆11Updated last year
- Interactive, web tool for exploring pan-genome of bacterial strains☆45Updated last year
- VarSkip multiplex PCR designs for SARS-CoV-2 sequencing☆13Updated 2 years ago
- Collection of R scripts for SARS-CoV-2 (variant) analyses☆12Updated last year
- k-mer based Pipeline to identify the Serotype from Illumina NGS reads☆19Updated last year
- In silico serotyping, finetyping and Bexsero antigen sequence typing of Neisseria meningitidis☆11Updated last year