SARs-CoV-2 Primer schemes
☆16May 14, 2025Updated last year
Alternatives and similar repositories for SARS-CoV-2
Users that are interested in SARS-CoV-2 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Repo for PrimerSchemes☆22Updated this week
- Nanopore read de-multiplexer☆13Mar 25, 2020Updated 6 years ago
- Primer schemes for real-time genome epidemiology☆32Jun 14, 2023Updated 3 years ago
- Renders SVG schema of SARS-CoV-2 clade as defined by Nextstrain☆18Nov 24, 2025Updated 11 months ago
- Small collection of tools for performing quality control on coronavirus sequencing data and genomes☆49May 14, 2026Updated 5 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- VGEA (Viral Genomes Easily Analyzed) is a pipeline for analysis of RNA virus next-generation sequencing data.☆19Sep 12, 2021Updated 5 years ago
- Tools for analyzing and comparing SARS-CoV-2 phylogenies☆10Nov 21, 2020Updated 5 years ago
- The repository for the Viral Genomics and Bioinformatics 2022 course☆11Jul 5, 2024Updated 2 years ago
- VarSkip multiplex PCR designs for SARS-CoV-2 sequencing☆15Oct 9, 2026Updated 3 weeks ago
- A Nextflow pipeline for running the ARTIC network's fieldbioinformatics tools (https://github.com/artic-network/fieldbioinformatics), wit…☆92Nov 8, 2023Updated 2 years ago
- Prepares a SARS-CoV-2 submission for GISAID, NCBI or ENA. Can read GISAID or NCBI files, or plain fasta+tsv/csv/xls. Finds files in input…☆36May 1, 2022Updated 4 years ago
- ☆51Mar 11, 2022Updated 4 years ago
- Programmatically interact with the GISAID database.☆83Aug 5, 2025Updated last year
- ☆11Aug 18, 2024Updated 2 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- IRMA (the Iterative Refinement Meta-Assembler) is a highly configurable and adaptive tool for virus genome assembly.☆29Sep 30, 2026Updated last month
- ARTIC nanopore protocol for nCoV2019 novel coronavirus☆171Mar 22, 2023Updated 3 years ago
- MultiQC plugin replicating the most used plots and tables from Illumina's SAV☆11Aug 31, 2026Updated last month
- ☆21Apr 2, 2025Updated last year
- ☆13May 29, 2026Updated 5 months ago
- Consensus sequences for each Pango lineage☆25Jun 27, 2025Updated last year
- The Zika bioinformatics pipeline☆37Mar 29, 2020Updated 6 years ago
- For all your cluster needs☆20Feb 3, 2023Updated 3 years ago
- During outbreaks of emerging diseases such as COVID-19, efficiently collecting, sharing, and integrating data is critical to scientific r…☆35Oct 13, 2026Updated 2 weeks ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- The ARTIC fieldbioinformatics pipeline☆136Aug 26, 2026Updated 2 months ago
- ☆22Jun 1, 2026Updated 4 months ago
- RSV-A lineage definitions and proposals☆16Nov 9, 2025Updated 11 months ago
- Splitting and accelerating the Oxford Nanopore basecaller guppy using CPU with the SLURM job scheduler☆17Oct 9, 2026Updated 3 weeks ago
- app to collapse Pango lineages for reporting☆14Oct 2, 2026Updated 3 weeks ago
- Ampseer examines reads in fastq format and identifies which multiplex PCR primer set was used to generate the SARS-CoV-2 sequencing libra…☆15Feb 27, 2024Updated 2 years ago
- Amplicon Sequencing Analysis Pipeline☆19Sep 12, 2025Updated last year
- ☆25Jun 25, 2024Updated 2 years ago
- Spriggan is a pipeline used for assembly of bacterial whole genome sequence data and identification of antibiotic resistance genes.☆16Updated this week
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- SARS-CoV-2 genome data analysis☆10Dec 6, 2025Updated 10 months ago
- Olivar: towards automated variant aware primer design for multiplex tiled amplicon sequencing of pathogens☆42Apr 6, 2026Updated 6 months ago
- SARS-CoV-2: detecting recombinations in viruses using large data sets with high sequence similarity☆13Aug 14, 2023Updated 3 years ago
- Salmonella serotyping from genome sequencing data☆11Sep 3, 2018Updated 8 years ago
- Munge GenBank files into FASTA and tab-separated metadata☆15Feb 5, 2026Updated 8 months ago
- Detection of viruses from RNA-Seq on human samples☆46Mar 18, 2023Updated 3 years ago
- Depth-weighted De-Mixing☆134Updated this week