Alternatives and similar repositories for multiSub:

Users that are interested in multiSub are comparing it to the libraries listed below

• CDCgov / seqsender
  Automated Pipeline to Generate FTP Files and Manage Submission of Sequence Data to Public Repositories
  ☆35Updated last week
• pha4ge / pipeline-resources
  Bioinformatics Pipeline and Visualization resources
  ☆55Updated 6 months ago
• jhuapl-bio / taxtriage
  TaxTriage is a Nextflow workflow designed to agnostically identify and classify microbial organisms within short- or long-read metagenomi…
  ☆34Updated this week
• tseemann / cgmlst-dists
  🐻⇔🐨 Calculate distance matrix from ChewBBACA cgMLST allele call tables
  ☆27Updated last year
• simonrharris / SKA
  Split Kmer Analysis
  ☆62Updated 2 years ago
• CFSAN-Biostatistics / C-WAP
  SC2 variant detection and composition pipeline
  ☆17Updated last year
• jordanlab / stringMLST
  Fast k-mer based tool for multi locus sequence typing (MLST)
  ☆43Updated 4 years ago
• marbl / harvest
  ☆52Updated 3 years ago
• USDA-VS / GenoFLU
  Influenza data pipeline to automate genotyping assignment
  ☆29Updated last month
• chrisruis / MutTui
  MutTui pipeline to reconstruct mutational spectra for bacterial and viral datasets
  ☆28Updated 8 months ago
• phac-nml / refseq_masher
  Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database
  ☆41Updated 4 years ago
• rrwick / Verticall
  Recombination-free trees
  ☆57Updated last year
• wtmatlock / flanker
  Gene-flank analysis tool
  ☆27Updated 2 months ago
• flu-crew / parnas
  Phylogenetic maximum representation sampling: choosing most representative strains or taxa
  ☆37Updated 3 months ago
• pha4ge / hAMRonization_workflow
  Harmonization of AMR predictor tool outputs
  ☆23Updated last month
• jodyphelan / tbdb
  Standard database for the TBProfiler tool
  ☆29Updated 2 weeks ago
• variant-database / vdb
  A SARS-CoV-2 Mutation Pattern Query Tool
  ☆17Updated last year
• virus-evolution / gofasta
  ☆35Updated last week
• mw55309 / ideel
  Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes
  ☆53Updated last year
• asmngs / asmngs20
  ASMNGS20 - 2020 Conference Details
  ☆15Updated 2 years ago
• bioinfo-ut / PlasmidSeeker
  A k-mer based program for the identification of known plasmids from whole-genome sequencing reads
  ☆35Updated 4 years ago
• katholt / RedDog
  ☆36Updated 2 years ago
• insapathogenomics / ReporTree
  A surveillance-oriented tool to strengthen the linkage between pathogen genetic clusters and epidemiological data
  ☆32Updated 3 months ago
• bacpop / ggCaller
  Bifrost graph gene caller.
  ☆93Updated 5 months ago
• jts / assembly_accuracy
  tools for assessing the accuracy of genome assemblies
  ☆34Updated 10 months ago
• oschwengers / asap
  A scalable bacterial genome assembly, annotation and analysis pipeline
  ☆73Updated last year
• bonsai-team / Porechop_ABI
  Adapter trimmer for Oxford Nanopore reads using ab initio method
  ☆40Updated 3 months ago
• theiagen / public_health_bacterial_genomics
  ☆26Updated last year
• bacpop / ska.rust
  Split k-mer analysis – version 2
  ☆75Updated last month
• sanger-pathogens / iva
  de novo virus assembler of Illumina paired reads
  ☆55Updated 3 years ago