Simulating virus evolution and epidemiology
☆21Feb 22, 2022Updated 4 years ago
Alternatives and similar repositories for antigen
Users that are interested in antigen are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Lecture on viral phylodynamics☆11Oct 28, 2021Updated 4 years ago
- Inferring spatiotemporal dynamics of the H1N1 influenza pandemic from sequence data☆33Oct 25, 2013Updated 12 years ago
- CRAN Task View: Epidemiology☆23Jun 6, 2026Updated last month
- Basic Tools for the Analysis of Disease Outbreaks☆12Oct 24, 2019Updated 6 years ago
- A forward-time simulator for gene sequences modeling a variety of mutation and selection processes.☆21Aug 23, 2023Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Coalescent simulation and likelihood for phylodynamic inference☆15May 15, 2025Updated last year
- Analysis of global migration patterns of seasonal influenza viruses☆22Jul 24, 2019Updated 6 years ago
- Curated datasets on reported cases of the SARS-CoV-2 Omicron (B.1.1.529) Variant of Concern☆10Jan 25, 2022Updated 4 years ago
- Source files for online resources of Bioinformatics of Infectious Diseases course☆22May 21, 2020Updated 6 years ago
- Covid-19 epidemiology - data and analysis☆11Dec 7, 2023Updated 2 years ago
- Welcome to the StrainHub Repo - Files and Data - StrainHub Online:☆18Jun 26, 2022Updated 4 years ago
- ☆10Dec 20, 2022Updated 3 years ago
- Introduction to Reproducible Publications with Quarto☆19Jun 23, 2026Updated last week
- Small Helpers and Tricks for Epidemics Analysis☆12Sep 20, 2023Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆23Mar 20, 2026Updated 3 months ago
- An R package to accompany the Epidemiology R Handbook, a free open-access R reference manual for applied epidemiologists and public healt…☆56May 16, 2025Updated last year
- Python-based framework for computational immunomics☆40Jul 7, 2021Updated 4 years ago
- Java software to analyse phylogeny-trait correlations in discrete traits, accounting for phylogenetic uncertainty via posterior sampling.☆13Sep 26, 2017Updated 8 years ago
- Alignment editor for Mac OS X☆29Aug 1, 2017Updated 8 years ago
- Diploid personal genome assembly and comprehensive variant detection based on linked-reads☆21Apr 28, 2023Updated 3 years ago
- R code for writing Beast2 XML (especially morphology/tip-dating)☆11Jun 26, 2024Updated 2 years ago
- Phylogenetic trees in Julia☆21Sep 1, 2021Updated 4 years ago
- R package for multiple sequence alignment☆26Jun 8, 2026Updated 3 weeks ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A collection of htmlwidgets handy for epidemiology, etc.☆13Jul 5, 2015Updated 11 years ago
- ☆12May 12, 2019Updated 7 years ago
- R package to run BEAST2☆11Dec 8, 2025Updated 6 months ago
- ☆13Jun 25, 2026Updated last week
- The R package 'phylosamp' implements novel tools that estimate the probability of transmission between two cases given phylogenetic linka…☆13May 23, 2023Updated 3 years ago
- Shiny app providing estimates of future bed occupancy given recent admissions☆12Jul 2, 2020Updated 6 years ago
- ☆12Oct 11, 2022Updated 3 years ago
- Resources for Influenza Research☆24Aug 3, 2022Updated 3 years ago
- Optimised estimates of reproduction numbers over time, which extract more information from an incidence curve than many conventional appr…☆22Dec 9, 2023Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Rapid analysis and visualization of coronavirus genome variation☆48Apr 2, 2026Updated 3 months ago
- Reconstruction of transmission trees using genomic data☆72Sep 27, 2023Updated 2 years ago
- The BiomolecularStructures package provides several Bioinformatics-related modules for Julia.☆12Jun 13, 2017Updated 9 years ago
- Spread visualizes how viruses and other pathogens are spreading in time and space. It creates compellable shareable, interactive and time…☆20Jan 23, 2025Updated last year
- SpaCE, the Spatial Confounding Environment, loads benchmark datasets for causal inference methods tackling spatial confounding☆19Jun 28, 2025Updated last year
- Epidemiological agent-based modelling packages in both python and C++. Published at: https://doi.org/10.5334/jors.449.☆21Sep 12, 2025Updated 9 months ago
- Consensus sequences for U.S. H5N1 clade 2.3.4.4b☆37Jun 27, 2026Updated last week