ropensci / beautierLinks
R package to generate the same BEAST2 XML parameter files as generated by BEAUti 2
☆13Updated last week
Alternatives and similar repositories for beautier
Users that are interested in beautier are comparing it to the libraries listed below
Sorting:
- R package to run BEAST2☆11Updated this week
- babette is an R package to work with BEAST2☆46Updated last month
- ☆11Updated 7 months ago
- population genetic simulations with R and Shiny☆28Updated last year
- R We There Yet?☆32Updated 8 months ago
- A textbook for phylogenetic comparative methods.☆43Updated 6 years ago
- ☆19Updated 2 weeks ago
- ☆36Updated last year
- Computes affinity between two entities based on their co-occurrence☆28Updated 5 months ago
- Explore spaces of phylogenetic trees☆29Updated 3 months ago
- R code for writing Beast2 XML (especially morphology/tip-dating)☆11Updated last year
- Disease outbreak reconstruction from epidemiological and genetic data☆34Updated last year
- An Amazing Shiny App☆17Updated 4 years ago
- An automated pipeline for retrieving orthologous DNA sequences from GenBank in R☆25Updated 4 months ago
- Coalescent simulation and likelihood for phylodynamic inference☆14Updated 6 months ago
- ☆19Updated 4 years ago
- A manuscript exploring the effects of taxonomic bias on microbiome differential-abundance analysis.☆12Updated 2 years ago
- This repo contains the code for a shiny app that allows for visualization of subset phylogenetic trees☆15Updated 6 years ago
- Calculate distances between phylogenetic trees in R☆34Updated 3 weeks ago
- Phylogenetic Likelihood Library 2 - experimental☆11Updated 7 months ago
- An R package that provides a base S4 class for comparative methods, incorporating one or more trees and trait data☆19Updated last year
- Metagenomics calibration R package☆20Updated 3 years ago
- Estimating time trees from very large phylogenies☆28Updated last year
- A Toolbox for Manipulating Biological Sequences in R☆26Updated 2 months ago
- Scalable relaxed clock phylogenetic dating☆27Updated 3 months ago
- phylogenetic networks using ggplot2 and ggtree☆13Updated 11 months ago
- Population Assignment using Genetic, Non-genetic or Integrated Data in a Machine-learning Framework. Methods in Ecology and Evolution.…☆16Updated 3 months ago
- ARCHIVED Access sequences from the 1000 Plant Initiative (1KP)☆13Updated last month
- A Tidy Tool for Phylogenetic Tree Data Manipulation☆57Updated last year
- Dendrograms for Evolutionary Analysis☆11Updated 6 years ago