ropensci / beautier
R package to generate the same BEAST2 XML parameter files as generated by BEAUti 2
☆13Updated this week
Alternatives and similar repositories for beautier:
Users that are interested in beautier are comparing it to the libraries listed below
- R package to run BEAST2☆11Updated this week
- ☆11Updated 2 years ago
- babette is an R package to work with BEAST2☆45Updated last week
- This repo contains the code for a shiny app that allows for visualization of subset phylogenetic trees☆15Updated 6 years ago
- An Amazing Shiny App☆17Updated 3 years ago
- ☆16Updated 3 years ago
- Scalable relaxed clock phylogenetic dating☆24Updated last year
- R code for writing Beast2 XML (especially morphology/tip-dating)☆11Updated 10 months ago
- population genetic simulations with R and Shiny☆27Updated 6 months ago
- An R package that provides a base S4 class for comparative methods, incorporating one or more trees and trait data☆19Updated last year
- An automated pipeline for retrieving orthologous DNA sequences from GenBank in R☆24Updated 9 months ago
- ☆34Updated 6 months ago
- A book for teaching people how to do comparative methods in R☆20Updated last year
- phylogenetic networks using ggplot2 and ggtree☆11Updated 3 years ago
- Coalescent simulation and likelihood for phylodynamic inference☆14Updated 2 months ago
- An R-wrapper for lsd2☆9Updated 2 years ago
- Exploring the Phylogenetic Signal in Continuous Traits☆16Updated last year
- Inferring spatiotemporal dynamics of H5N1 influenza from sequence data☆10Updated 11 years ago
- ☆11Updated 2 months ago
- Dendrograms for Evolutionary Analysis☆11Updated 5 years ago
- A suite of methods and models for studying evolutionary radiations☆23Updated 2 years ago
- A manuscript exploring the effects of taxonomic bias on microbiome differential-abundance analysis.☆12Updated last year
- Ordination lectures for Ecological Methods in Oulu☆18Updated 9 months ago
- ☆17Updated 3 weeks ago
- Basic Tools for the Analysis of Disease Outbreaks☆12Updated 5 years ago
- R We There Yet?☆30Updated last month
- initial commit☆26Updated 2 years ago
- A model-based visualization method for microbiome data☆16Updated 2 years ago
- A DRAFT, early stage book on snakemake.☆18Updated last year
- A Toolbox for Manipulating Biological Sequences in R☆22Updated 2 years ago