Alternatives and similar repositories for seqotron

Users that are interested in seqotron are comparing it to the libraries listed below

• karel-brinda / ococo
  Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.
  ☆47Updated 6 years ago
• sestaton / Transposome
  A toolkit for annotation of transposable element families from unassembled sequence reads
  ☆30Updated 2 years ago
• hopkinsmarinestation / Population-Genomics-via-RNAseq
  Guide to transcriptome assembly & analysis
  ☆21Updated 8 years ago
• kgori / treeCl
  Clustering phylogenetic trees with python
  ☆25Updated 10 months ago
• stamatak / ExaML
  Exascale Maximum Likelihood (ExaML) code for phylogenetic inference using MPI
  ☆50Updated 5 years ago
• ekg / bamaddrg
  adds sample names and read-group (RG) tags to BAM alignments
  ☆51Updated 4 years ago
• tlawrence3 / FAST
  FAST: Fast Analysis of Sequences Toolbox
  ☆31Updated 5 years ago
• ibest / ARC
  Assembly by Reduced Complexity (ARC)
  ☆42Updated 9 years ago
• opencb / hpg-variant
  A complete suite of tools to work with genomic variation data, from VCF tools to variant profiling or genomic statistics
  ☆13Updated 9 years ago
• blaxterlab / blobology
  Tools for making blobplots or Taxon-Annotated-GC-Coverage plots (TAGC plots) to visualise the contents of genome assembly data sets as a …
  ☆46Updated 3 years ago
• tseemann / homebrew-bioinformatics-linux
  Homebrew formulae for bioinformatics software only available for Linux
  ☆27Updated 5 years ago
• rvosa / bio-phylo
  Bio::Phylo - Phyloinformatic analysis using Perl
  ☆16Updated 6 years ago
• LynchLab / MAPGD
  A program for the Maximum-likelihood analysis of population genomic data.
  ☆28Updated 4 years ago
• pmelsted / KmerStream
  Streaming algorithm for computing kmer statistics for massive genomics datasets
  ☆54Updated 5 years ago
• douglasgscofield / PacBio-utilities
  Collection of utilities for working with PacBio-based assemblies
  ☆13Updated 2 years ago
• nf-core / cookiecutter
  DEPRECIATED! Please use nf-core/tools instead
  ☆19Updated 6 years ago
• benedictpaten / sonLib
  Small general purpose library for C and Python with focus on bioinformatics.
  ☆30Updated 2 years ago
• ansariazim / treeBreaker
  Algorithm to divide a phylogenetic tree into segments based on phenotypes at the leaves of the tree
  ☆25Updated 6 years ago
• HadrienG / nanoflow
  De novo assembly of nanopore reads using nextflow
  ☆20Updated 4 years ago
• sejmodha / MetaViC
  Virus metagenomic pipeline for unknown host or in absence of a host genome
  ☆18Updated 5 years ago
• joey711 / biom
  Development version of the biom package for R
  ☆24Updated 4 years ago
• danlwarren / RWTY
  R We There Yet?
  ☆30Updated 3 months ago
• grenaud / deML
  Maximum likelihood demultiplexing
  ☆47Updated 4 months ago
• sanger-pathogens / gff3toembl
  Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI
  ☆29Updated 6 years ago
• emmanuelparadis / pegas
  Population and Evolutionary Genetics Analysis System
  ☆28Updated 3 months ago
• biosails / pheniqs
  Fast and accurate sequence demultiplexing
  ☆28Updated 2 weeks ago
• janepipistrelle / bacterial_GWAS_tutorial
  Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop
  ☆18Updated 9 years ago
• ukhsa-collaboration / PHEnix
  Public Health England SNP calling pipeline.
  ☆36Updated 6 years ago
• nebiolabs / ampseer
  Ampseer examines reads in fastq format and identifies which multiplex PCR primer set was used to generate the SARS-CoV-2 sequencing libra…
  ☆14Updated last year
• zhaoyanswill / RAPSearch2
  Reduced Alphabet based Protein similarity Search
  ☆41Updated 4 years ago