4ment / seqotron

Related projects: ⓘ

• sestaton / Transposome
  A toolkit for annotation of transposable element families from unassembled sequence reads
  ☆31Updated last year
• karel-brinda / ococo
  Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.
  ☆47Updated 5 years ago
• kgori / treeCl
  Clustering phylogenetic trees with python
  ☆24Updated last month
• stamatak / ExaML
  Exascale Maximum Likelihood (ExaML) code for phylogenetic inference using MPI
  ☆49Updated 4 years ago
• tlawrence3 / FAST
  FAST: Fast Analysis of Sequences Toolbox
  ☆31Updated 4 years ago
• rvosa / bio-phylo
  Bio::Phylo - Phyloinformatic analysis using Perl
  ☆16Updated 5 years ago
• joey711 / biom
  Development version of the biom package for R
  ☆24Updated 3 years ago
• opencb / hpg-variant
  A complete suite of tools to work with genomic variation data, from VCF tools to variant profiling or genomic statistics
  ☆13Updated 8 years ago
• indraniel / fqgrep
  An approximate sequence pattern matcher for FASTQ/FASTA files.
  ☆30Updated 8 years ago
• sanger-pathogens / gff3toembl
  Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI
  ☆29Updated 5 years ago
• benjaminhgood / LTEE-metagenomic
  Time-resolved metagenomic sequencing of Lenski's long-term evolution experiment with Escherichia coli
  ☆23Updated 5 years ago
• douglasgscofield / PacBio-utilities
  Collection of utilities for working with PacBio-based assemblies
  ☆13Updated last year
• macmanes-lab / Gen711
  ☆12Updated 8 years ago
• ncbi / pipelines
  ☆14Updated 5 years ago
• claczny / VizBin
  Repository of our application for human-augmented binning
  ☆27Updated 3 years ago
• hopkinsmarinestation / Population-Genomics-via-RNAseq
  Guide to transcriptome assembly & analysis
  ☆21Updated 7 years ago
• ansariazim / treeBreaker
  Algorithm to divide a phylogenetic tree into segments based on phenotypes at the leaves of the tree
  ☆25Updated 6 years ago
• tseemann / scapper
  Whole genome core alignments from multiple draft genomes
  ☆12Updated 8 years ago
• dahak-metagenomics / dahak
  benchmarking and containerization of tools for analysis of complex non-clinical metagenomes.
  ☆21Updated 6 years ago
• tseemann / homebrew-bioinformatics-linux
  Homebrew formulae for bioinformatics software only available for Linux
  ☆27Updated 5 years ago
• ibest / ARC
  Assembly by Reduced Complexity (ARC)
  ☆41Updated 8 years ago
• sejmodha / MetaViC
  Virus metagenomic pipeline for unknown host or in absence of a host genome
  ☆18Updated 5 years ago
• benedictpaten / sonLib
  Small general purpose library for C and Python with focus on bioinformatics.
  ☆29Updated 2 years ago
• nebiolabs / ampseer
  Ampseer examines reads in fastq format and identifies which multiplex PCR primer set was used to generate the SARS-CoV-2 sequencing libra…
  ☆14Updated 6 months ago
• LynchLab / MAPGD
  A program for the Maximum-likelihood analysis of population genomic data.
  ☆28Updated 3 years ago
• blaxterlab / blobology
  Tools for making blobplots or Taxon-Annotated-GC-Coverage plots (TAGC plots) to visualise the contents of genome assembly data sets as a …
  ☆46Updated 2 years ago
• pmelsted / KmerStream
  Streaming algorithm for computing kmer statistics for massive genomics datasets
  ☆53Updated 4 years ago
• dcdanko / MD2
  MicrobeDirectory 2.0
  ☆21Updated 4 years ago
• stajichlab / AAFTF
  Automatic Assembly For The Fungi
  ☆19Updated last year
• dib-lab / 2018-ncbi-lineages
  Extract lineage CSVs from NCBI for use with sourmash lca.
  ☆26Updated 11 months ago