A multi-algorithmic framework for phylogenetic inference
☆14Aug 25, 2026Updated 3 weeks ago
Alternatives and similar repositories for physher
Users that are interested in physher are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Developing efficient Bayesian phylogenetic inference methods☆12Dec 21, 2019Updated 6 years ago
- Leaping through tree space: continuous phylogenetic inference for rooted and unrooted trees☆12Sep 6, 2023Updated 3 years ago
- Phylogenetic inference using Stan☆24Mar 6, 2025Updated last year
- Code for learnable topological features for phylogenetic inference via graph neural networks☆11Mar 3, 2023Updated 3 years ago
- Sequential Tree Sampler for online phylogenetics☆16Mar 19, 2019Updated 7 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆13Jul 20, 2026Updated 2 months ago
- Python-interface C++ library for Bayesian phylogenetics via optimization☆41Apr 8, 2024Updated 2 years ago
- Alignment editor for Mac OS X☆30Aug 1, 2017Updated 9 years ago
- Fast Neighbor-Joining and other distance-based methods for phylogenetics☆17Jun 21, 2024Updated 2 years ago
- ☆22Jun 10, 2024Updated 2 years ago
- Alignment-free method to identify and analyse discriminant genomic subsequences within pathogen sequences☆10Feb 26, 2023Updated 3 years ago
- ☆13Aug 4, 2026Updated last month
- Munge GenBank files into FASTA and tab-separated metadata☆15Feb 5, 2026Updated 7 months ago
- VIRULIGN: fast codon-correct alignment and annotation of viral genomes☆35Apr 2, 2021Updated 5 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Inferring spatiotemporal dynamics of H5N1 influenza from sequence data☆10Sep 6, 2013Updated 13 years ago
- Codes for calculating delta, a phylogenetic analog of the Shannon entropy for measuring the degree of phylogenetic signal between a categ…☆26Jun 16, 2021Updated 5 years ago
- ☆14Apr 19, 2021Updated 5 years ago
- ☆12May 12, 2019Updated 7 years ago
- Virus reassortment inference software. Infers both recent and ancestral reassortment and uses flexible molecular clock constraints.☆23Sep 29, 2025Updated 11 months ago
- CREST - Classification Resources for Environmnetal Sequence Tags, is a collection of software and databases for taxonomic classification …☆12Mar 20, 2022Updated 4 years ago
- Prediction fitness of leaves on a genealogical tree☆12May 7, 2015Updated 11 years ago
- Code for computing various support scores for internodes☆19Apr 7, 2020Updated 6 years ago
- A database for signatures of public genomic sources☆18Jul 18, 2026Updated 2 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Bash scripts for analysis of Hyb-Seq data (from raw reads to species trees/networks)☆20Aug 17, 2026Updated last month
- Lightweight header-only C++ library for loading and traversing trees☆26Sep 5, 2026Updated 2 weeks ago
- Design primers for species-specific qPCR☆10Jun 1, 2017Updated 9 years ago
- ☆22Mar 25, 2014Updated 12 years ago
- R Data Exploration for Serratus☆16Mar 29, 2023Updated 3 years ago
- Cluster Investigation & Virus Epidemiology Tool☆51Jul 6, 2026Updated 2 months ago
- Bacterial Operon Finder for Functional Organization☆14Nov 14, 2023Updated 2 years ago
- Phylodynamic inference☆23May 15, 2020Updated 6 years ago
- Multiplexed Shotgun Genotyping☆11Feb 15, 2022Updated 4 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆18Jun 11, 2024Updated 2 years ago
- machine learning guided antigenic evolution prediction☆12Jun 19, 2023Updated 3 years ago
- Species Level Identification of Microbes from Metagenomes☆27Apr 30, 2019Updated 7 years ago
- Bio++ Program Suite☆18Jul 10, 2026Updated 2 months ago
- Sequence simulator☆55Feb 3, 2025Updated last year
- Olivar: towards automated variant aware primer design for multiplex tiled amplicon sequencing of pathogens☆42Apr 6, 2026Updated 5 months ago
- Given a set of kmers (fasta format) and a set of sequences (fasta format), this tool will extract the sequences containing the kmers.☆21Oct 20, 2023Updated 2 years ago