4ment / physherLinks
A multi-algorithmic framework for phylogenetic inference
☆14Updated this week
Alternatives and similar repositories for physher
Users that are interested in physher are comparing it to the libraries listed below
Sorting:
- Main development repository for SpreadGL☆19Updated last year
- Phylogenetic maximum representation sampling: choosing most representative strains or taxa☆40Updated 2 months ago
- VIRULIGN: fast codon-correct alignment and annotation of viral genomes☆35Updated 4 years ago
- ☆42Updated last year
- Extract lineage CSVs from NCBI for use with sourmash lca.☆29Updated 2 years ago
- ☆18Updated last year
- Python HyPhy: Facilitating HyPhy execution and parsing☆21Updated 3 years ago
- An `R` package for various phylogenetic and evolutionary biology data manipulations☆12Updated 7 years ago
- Scalable relaxed clock phylogenetic dating☆27Updated 2 months ago
- ☆19Updated last year
- Reconstruction of transmission trees using genomic data☆68Updated 2 years ago
- A set of scripts for calculating pairwise SNP distance☆43Updated 2 years ago
- a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome☆50Updated 3 years ago
- Rapid and scalable homolog identification for bacterial genomes☆33Updated 6 years ago
- Collection of R scripts for SARS-CoV-2 (variant) analyses☆12Updated 2 years ago
- ☆18Updated last month
- Phylogenetics between and within hosts at once, all along the genome.☆50Updated last year
- map Illumina metagenomes to genomes!☆38Updated last week
- Tools for making blobplots or Taxon-Annotated-GC-Coverage plots (TAGC plots) to visualise the contents of genome assembly data sets as a …☆47Updated 3 years ago
- ☆30Updated 2 years ago
- SWORD - a highly efficient protein database search☆26Updated last year
- Influenza genome analysis Nextflow workflow☆24Updated 2 months ago
- Mandrake 🌿/👨🔬🦆 – Fast visualisation of the population structure of pathogens using Stochastic Cluster Embedding☆39Updated 8 months ago
- MutTui pipeline to reconstruct mutational spectra for bacterial and viral datasets☆31Updated last year
- De novo Extraction of Strains from MetAgeNomes☆71Updated 5 years ago
- Detection of NCLDV signatures in 'omic data☆35Updated last year
- PREQUAL: a pre-alignment quality filter for comparative sequence analyses☆32Updated 3 years ago
- Read contamination removal☆25Updated last year
- Bacterial phylogenetics in BEAST 2.☆18Updated 2 years ago
- Metagenomic profiling and phylogenetic distances via common kmers☆42Updated 4 years ago