trvrb / phylodynamics-lectureLinks
Lecture on viral phylodynamics
☆12Updated 3 years ago
Alternatives and similar repositories for phylodynamics-lecture
Users that are interested in phylodynamics-lecture are comparing it to the libraries listed below
Sorting:
- Scalable relaxed clock phylogenetic dating☆25Updated last year
- Work on the variant_pipeline and initial r analysis used in calling variants from NGS data☆9Updated 6 years ago
- Phylogenetic Clustering by Linear Integer Programming (PhyCLIP)☆19Updated 4 years ago
- Nanopore Real-Time Analysis Tool☆15Updated 9 months ago
- phylogenetic analyses informed by deep mutational scanning data☆14Updated last year
- BACTpipe: An assembly and annotation pipeline for bacterial genomics☆20Updated 6 months ago
- ☆10Updated last month
- Inferring spatiotemporal dynamics of H5N1 influenza from sequence data☆9Updated 10 years ago
- repo for 2016 EDAMAME tutorials☆11Updated 8 years ago
- FishTaco (Functional Shifts Taxonomic Contributors) is a metagenomic computational framework that aims to identify the driver taxa of mic…☆24Updated 3 years ago
- Algorithm to divide a phylogenetic tree into segments based on phenotypes at the leaves of the tree☆25Updated 6 years ago
- ☆10Updated 12 years ago
- Influenza genome analysis Nextflow workflow☆22Updated 2 months ago
- Annotation of Metabolite Origin via Networks: A tool for predicting putative metabolite origins for microbes or between microbes and host…☆21Updated last year
- Analyze a set of genomes with the anvi'o pangenome pipeline☆17Updated last year
- Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop☆18Updated 9 years ago
- Inferring spatiotemporal dynamics of H5N1 influenza from sequence data☆10Updated 11 years ago
- A Shotgun Metagenome Annotation Pipeline☆23Updated 8 years ago
- Main development repository for SpreadGL☆18Updated 8 months ago
- Virus metagenomic pipeline for unknown host or in absence of a host genome☆18Updated 5 years ago
- Quality control for phylogenetic analyses☆13Updated 3 months ago
- ☆19Updated last year
- ☆17Updated last year
- Pipelines to do MinION sequencing of Zika virus☆15Updated 5 years ago
- Ebola virus surveillance☆16Updated 8 years ago
- A pipeline for performing genome-wide association tests for bacterial genomes.☆27Updated 7 years ago
- ☆17Updated this week
- An `R` package for various phylogenetic and evolutionary biology data manipulations☆12Updated 7 years ago
- ☆12Updated 6 years ago
- ☆22Updated 2 years ago