cbg-ethz / cojac
☆19Updated last month
Related projects ⓘ
Alternatives and complementary repositories for cojac
- MutTui pipeline to reconstruct mutational spectra for bacterial and viral datasets☆28Updated 4 months ago
- A surveillance-oriented tool to strengthen the linkage between pathogen genetic clusters and epidemiological data☆29Updated last month
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆53Updated last year
- Recombination-free trees☆56Updated last year
- Gene-flank analysis tool☆26Updated 6 months ago
- Split Kmer Analysis☆63Updated 2 years ago
- Inferring bacterial recombination rates from large-scale sequencing datasets.☆41Updated last year
- Bifrost graph gene caller.☆88Updated 2 months ago
- Fast k-mer based tool for multi locus sequence typing (MLST)☆42Updated 4 years ago
- ☆35Updated 3 months ago
- Influenza data pipeline to automate genotyping assignment☆22Updated 3 weeks ago
- Bacterial GWAS analysis☆32Updated last month
- ASMNGS20 - 2020 Conference Details☆15Updated 2 years ago
- Precise host read removal☆78Updated last week
- Phylogenetic maximum representation sampling: choosing most representative strains or taxa☆29Updated last month
- Automated strain separation of low-complexity metagenomes☆51Updated 3 years ago
- 🐻⇔🐨 Calculate distance matrix from ChewBBACA cgMLST allele call tables☆27Updated last year
- SC2 variant detection and composition pipeline☆16Updated last year
- A python library for predicting phage lifestyle based on genome sequence☆35Updated last year
- ☆44Updated 2 weeks ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆49Updated this week
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆25Updated 3 weeks ago
- post processing of bacterial pangenome gene presence/absence matrices☆52Updated 2 months ago
- Split k-mer analysis – version 2☆70Updated 3 weeks ago
- Identify phage regions in bacterial genomes for masking purposes☆30Updated 5 years ago
- Collection of R scripts for SARS-CoV-2 (variant) analyses☆12Updated last year
- Small utility script to submit genomes to PHASTER for phage detection☆23Updated 3 years ago
- Influenza genome analysis Nextflow workflow☆22Updated 3 weeks ago
- a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome☆46Updated 2 years ago
- BEAV: Bacterial Element Annotation reVamped☆59Updated 3 weeks ago