☆19Nov 24, 2025Updated 4 months ago
Alternatives and similar repositories for cojac
Users that are interested in cojac are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- VILOCA: VIral LOcal haplotype reconstruction and mutation CAlling for short and long read data☆23Oct 21, 2025Updated 5 months ago
- V-pipe is a pipeline designed for analysing NGS data of short viral genomes☆144Nov 19, 2025Updated 4 months ago
- SARS-CoV-2 (Va)riant (Qu)antification in s(E)wage, designed for (Ro)bustness☆13Oct 10, 2025Updated 5 months ago
- Variant abundance estimation for SARS-CoV-2 in wastewater using RNA-Seq quantification☆15Sep 27, 2023Updated 2 years ago
- PiGx SARS-CoV-2 wastewater sequencing pipeline☆18May 3, 2023Updated 2 years ago
- NordVPN Special Discount Offer • AdSave on top-rated NordVPN 1 or 2-year plans with secure browsing, privacy protection, and support for for all major platforms.
- Main development repository for SpreadGL☆21Sep 30, 2024Updated last year
- Depth-weighted De-Mixing☆128Updated this week
- Repo for the software suite ShoRAH (Short Reads Assembly into Haplotypes)☆41Feb 24, 2023Updated 3 years ago
- ☆12Jul 21, 2025Updated 8 months ago
- A COVID-19 CoV Genetics (CG) browser to inform therapeutics development☆26Jan 12, 2026Updated 2 months ago
- SARS-Cov-2 Recombinant Finder for fasta sequences☆50Jun 22, 2022Updated 3 years ago
- Single-cell Iso Prep☆17Oct 28, 2023Updated 2 years ago
- iVar is a computational package that contains functions broadly useful for viral amplicon-based sequencing.☆134Updated this week
- ☆74Jan 23, 2024Updated 2 years ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Inferring spatiotemporal dynamics of the H1N1 influenza pandemic from sequence data☆33Oct 25, 2013Updated 12 years ago
- SARS-CoV-2 genome data analysis☆10Dec 6, 2025Updated 3 months ago
- ElasticBLAST is a cloud-based tool to perform your BLAST searches faster and make you more effective☆67Jan 29, 2026Updated last month
- A Cursor type for use with rust-postgres☆14May 31, 2023Updated 2 years ago
- R package to access the genomics and epidemiology data and Research Library metadata compiled and standardized on outbreak.info.☆21Mar 5, 2023Updated 3 years ago
- 🧮 Extended Latent Dirichlet Allocation for Collaborative Filtering in Recommender Systems.☆42May 16, 2022Updated 3 years ago
- Snakemake profile for running jobs on an LSF cluster☆38Jul 29, 2024Updated last year
- Identify Variants of Concern from metagenomic samples of SARS-CoV-2☆12Sep 9, 2021Updated 4 years ago
- Datasets for https://github.com/nextstrain/nextclade☆44Mar 6, 2026Updated 2 weeks ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- 🧬 Viral genome reference alignment☆12Jan 26, 2021Updated 5 years ago
- ☆13Mar 12, 2026Updated 2 weeks ago
- Summarise nucleotide counts at a set of positions in a BAM file to search for mixtures☆13Apr 5, 2022Updated 3 years ago
- A viral haplotype reconstruction tool for long reads.☆13Mar 2, 2024Updated 2 years ago
- Renders SVG schema of SARS-CoV-2 clade as defined by Nextstrain☆17Nov 24, 2025Updated 4 months ago
- Front-end code for Serratus project website☆12Jul 2, 2024Updated last year
- Primecoin High Performance☆52May 22, 2018Updated 7 years ago
- ☆29Sep 28, 2021Updated 4 years ago
- ☆24Dec 2, 2022Updated 3 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- snpless-nf - A Nextflow pipeline for time-course analysis with bacterial NGS whole-genome data.☆14May 12, 2024Updated last year
- Nextstrain build for mpox virus☆50Mar 16, 2026Updated last week
- Add biological annotations to variants in a given VCF file.☆32Sep 13, 2021Updated 4 years ago
- SC2 variant detection and composition pipeline☆19Jul 14, 2023Updated 2 years ago
- This is an updated mirror of the original PacBio Read Simulator☆39Mar 30, 2018Updated 7 years ago
- ARTIC SARS-CoV-2 workflow and reporting☆50Apr 25, 2025Updated 11 months ago
- Inference of putative transmission phylogenetic clusters☆12Oct 13, 2020Updated 5 years ago