trvrb / fluxLinks
Integrating influenza antigenic dynamics with molecular evolution
☆12Updated 10 years ago
Alternatives and similar repositories for flux
Users that are interested in flux are comparing it to the libraries listed below
Sorting:
- phylogenetic analyses informed by deep mutational scanning data☆15Updated last year
- Nanopore Real-Time Analysis Tool☆15Updated last year
- Pipeline for Illumina shotgun sequencing of 16S rRNA amplicon sequences☆14Updated 9 years ago
- RNA-seq for Mendelian disease diagnostics: A hands-on tutorial through bioinformatic tools and workflows☆17Updated 3 years ago
- PanGenomePipeline☆16Updated last year
- Quality control for phylogenetic analyses☆13Updated last month
- Lecture on viral phylodynamics☆12Updated 3 years ago
- R Interface to the NCBI SRA metadata☆23Updated 6 years ago
- dv-trio provides a pipeline to call variants for a trio (father-mother-child) using DeepVariants [1]. Genomic Variant Calling Files (gVCF…☆11Updated 4 years ago
- R package specialized in HLA typing clustering and visualization based on specific similarity metrics☆14Updated 5 years ago
- Clinical Variant Annotation Pipeline☆10Updated 5 years ago
- Mostly deprecated in favor of : https://github.com/hbc/bcbioRNASeq. Quality control, differential gene/transcript expression and pathway …☆24Updated 7 years ago
- A program for fast and accurate genome-guided transcripts reconstruction and quantification from RNA-seq (Supporting Pacbio single-end)☆24Updated 4 years ago
- Accurate and fast taxonomic classification using pseudoaligning☆21Updated 8 years ago
- Generate HTML report for a set of genomic regions or DESeq2/edgeR results☆10Updated 8 months ago
- Expectation-Maximization algorithm for Allele-Specific Expression☆21Updated 2 years ago
- SeqWho - A reliable and rapid FASTQ(A) file classifier☆10Updated 3 years ago
- Allele-Specific Quantification of Structural Variations in Cancer Genomes☆18Updated 6 years ago
- TreeGrafter is a new software tool for annotating uncharacterized protein sequences, using annotated phylogenetic trees.☆11Updated 2 months ago
- R package for Enrichment Depletion Logos (EDLogos) and String Logos☆27Updated 6 years ago
- A JBrowse plugin for creating sashimi or junction style plots from RNA-seq data☆14Updated 4 years ago
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆17Updated 5 years ago
- Toolkit for calling and analyzing de novo STR mutations☆14Updated last year
- CLI to automate Nextflow pipeline testing☆12Updated 2 weeks ago
- Qtip: a tandem simulation approach for accurately predicting read alignment mapping qualities☆25Updated 5 years ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year
- A pipeline for making SWIft Genomes in a Graph (SWIGG) using k-mers☆22Updated 5 years ago
- Tools for generating and decoding error-correcting DNA barcodes☆15Updated 3 years ago
- QuasiModo: Assessing viral genomic analysis methods on HCMV strain mixture☆12Updated 3 years ago
- materials and website for the 2016 kallisto sleuth workshop☆11Updated 8 years ago