trvrb / fluxLinks
Integrating influenza antigenic dynamics with molecular evolution
☆12Updated 10 years ago
Alternatives and similar repositories for flux
Users that are interested in flux are comparing it to the libraries listed below
Sorting:
- phylogenetic analyses informed by deep mutational scanning data☆15Updated last year
- Quality control for phylogenetic analyses☆13Updated 3 weeks ago
- Nanopore Real-Time Analysis Tool☆17Updated last year
- PanGenomePipeline☆16Updated last year
- Accurate and fast taxonomic classification using pseudoaligning☆21Updated 8 years ago
- A program for fast and accurate genome-guided transcripts reconstruction and quantification from RNA-seq (Supporting Pacbio single-end)☆24Updated 4 years ago
- R Interface to the NCBI SRA metadata☆23Updated 7 years ago
- QuasiModo: Assessing viral genomic analysis methods on HCMV strain mixture☆12Updated 3 years ago
- R package for Enrichment Depletion Logos (EDLogos) and String Logos☆27Updated 7 years ago
- Qtip: a tandem simulation approach for accurately predicting read alignment mapping qualities☆25Updated 6 years ago
- A pipeline for making SWIft Genomes in a Graph (SWIGG) using k-mers☆22Updated 6 years ago
- Mostly deprecated in favor of : https://github.com/hbc/bcbioRNASeq. Quality control, differential gene/transcript expression and pathway …☆24Updated 8 years ago
- ☆26Updated 5 years ago
- Pipeline for Illumina shotgun sequencing of 16S rRNA amplicon sequences☆14Updated 9 years ago
- Modeling and correcting fragment sequence bias for RNA-seq☆24Updated last year
- Color DNA/RNA bases in terminal output☆21Updated 8 years ago
- dv-trio provides a pipeline to call variants for a trio (father-mother-child) using DeepVariants [1]. Genomic Variant Calling Files (gVCF…☆11Updated 5 years ago
- Allele-Specific Quantification of Structural Variations in Cancer Genomes☆18Updated 6 years ago
- Generate HTML report for a set of genomic regions or DESeq2/edgeR results☆10Updated last year
- 🍶 Genome assembly with short sequence reads☆25Updated 2 years ago
- ☆20Updated last year
- Improved multi-sample transcript abundance estimates using adaptive priors☆20Updated 7 years ago
- CLI to automate Nextflow pipeline testing☆12Updated last month
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Updated last year
- k-mer similarity analysis pipeline☆22Updated 2 months ago
- ☆10Updated 7 years ago
- Expectation-Maximization algorithm for Allele-Specific Expression☆21Updated 2 years ago
- RNA-seq for Mendelian disease diagnostics: A hands-on tutorial through bioinformatic tools and workflows☆17Updated 3 years ago
- Dynamic programming for aa-to-nt alignment with affine gap, splicing and frameshift☆19Updated last year
- SeqWho - A reliable and rapid FASTQ(A) file classifier☆10Updated 4 years ago