YuLab-SMU / seqcomboLinks
Visualization tool for genetic reassortment
β21Updated 6 months ago
Alternatives and similar repositories for seqcombo
Users that are interested in seqcombo are comparing it to the libraries listed below
Sorting:
- ggtree version of plotTree.Rβ18Updated 6 years ago
- Schloss Lab Tools for Reproducible Microbiome Research π©β31Updated 2 years ago
- A shiny package for microbiome functional enrichment analysisβ36Updated 6 months ago
- Ying's tools for analysis, with particular focus on microbiome dataβ41Updated 3 weeks ago
- Handy tools for Microbiome analysis in Rβ18Updated 6 years ago
- R interface to the JBrowse 2 Linear Genome View.β38Updated last year
- R shiny app for interactive microbiome analysisβ56Updated 4 months ago
- A microbial profiling framework for metagenomic analysisβ24Updated 5 years ago
- Guangchuang Yu's CVβ43Updated 10 months ago
- Genome wide orthology inference and dNdS estimationβ96Updated last month
- An integrated analysis toolkit and pipeline for Next-Generation Sequencing (NGS) panel sequencing dataβ14Updated 7 years ago
- The is mostly a wrapper tool using phyloseq and microbiome R packages.β33Updated 2 years ago
- β26Updated 4 years ago
- A Linear Discriminant Analysis Effect Size (LEfSe) wrapper.β26Updated 8 years ago
- Microbiome researchβ21Updated 3 years ago
- A command line tool to compute mapping statistics from a BAM fileβ25Updated 3 years ago
- Tools for visualising microbial community amplicon dataβ69Updated last week
- A standalone interactive application for detecting biological significance on a set of genesβ40Updated 4 years ago
- A comprehensive and customizable R package for microbiome analysis.β23Updated 2 months ago
- Talk to the NCBI EUtilsβ22Updated 5 years ago
- Visualize microbiome data with black magic ggtreeβ68Updated 5 years ago
- Bulk RNA-seq Data Processing, Quality Control, and Downstream Analysis Pipelineβ20Updated 10 months ago
- UNDER DEVELOPMENT--- Analysis of long non-coding RNAs from RNA-seq datasetsβ34Updated 6 months ago
- Analysis of RNAseq data from (host-associated) microbial mixturesβ12Updated 5 years ago
- An R package for analysis of microbiome relative abundance data using zero inflated beta GAMLSS and meta-analysis across microbiome studiβ¦β34Updated 4 years ago
- A set of R functions that help faciliate a lot of tedious processingβ18Updated 7 years ago
- π An R package of RNA-seq workflowβ15Updated 3 years ago
- HPC pipeline for overlapping V4 16S rRNA reads generated on Illumina MiSeqβ11Updated 10 years ago
- Interactive Differential Expression Analyzerβ37Updated 5 years ago
- Transposon Insertion Finder - Detection of new TE insertions in NGS dataβ20Updated 5 months ago