YuLab-SMU / seqcomboLinks
Visualization tool for genetic reassortment
☆21Updated 3 months ago
Alternatives and similar repositories for seqcombo
Users that are interested in seqcombo are comparing it to the libraries listed below
Sorting:
- ggtree version of plotTree.R☆18Updated 7 years ago
- A shiny package for microbiome functional enrichment analysis☆38Updated last month
- Ying's tools for analysis, with particular focus on microbiome data☆41Updated last week
- A microbial profiling framework for metagenomic analysis☆24Updated 5 years ago
- Schloss Lab Tools for Reproducible Microbiome Research 💩☆31Updated 2 years ago
- ☆26Updated 4 years ago
- R package for microbiome analysis. Provides helper functions for common workflows ranging from preprocessing to visualization.☆24Updated 2 years ago
- A Linear Discriminant Analysis Effect Size (LEfSe) wrapper.☆26Updated 9 years ago
- R interface to the JBrowse 2 Linear Genome View.☆39Updated last year
- Guangchuang Yu's CV☆43Updated this week
- Analysis of RNAseq data from (host-associated) microbial mixtures☆12Updated 6 years ago
- Talk to the NCBI EUtils☆22Updated 5 years ago
- Handy tools for Microbiome analysis in R☆18Updated 6 years ago
- Genome wide orthology inference and dNdS estimation☆96Updated 5 months ago
- A standalone interactive application for detecting biological significance on a set of genes☆40Updated 4 years ago
- R shiny app for interactive microbiome analysis☆56Updated 8 months ago
- A comprehensive and customizable R package for microbiome analysis.☆23Updated 5 months ago
- A command line tool to compute mapping statistics from a BAM file☆25Updated 3 years ago
- Microbiome research☆21Updated 3 years ago
- ☆15Updated 4 months ago
- An integrated analysis toolkit and pipeline for Next-Generation Sequencing (NGS) panel sequencing data☆14Updated 7 years ago
- Maximum Likelihood Amplicon Pipeline☆22Updated last year
- UNDER DEVELOPMENT--- Analysis of long non-coding RNAs from RNA-seq datasets☆34Updated 10 months ago
- Visualize microbiome data with black magic ggtree☆68Updated 5 years ago
- A set of R scripts for the analysis of microbial profiles☆41Updated 3 weeks ago
- KOBAS: a command line tool for identifying significant pathways from genomic data☆32Updated 15 years ago
- Microbe-Metabolite INteractions-based metabolic profiles Predictor☆15Updated 2 years ago
- MTD: a unique pipeline for host and meta-transcriptome joint and integrative analyses of RNA-seq data☆17Updated 6 months ago
- Code for the paper "BIOLITMAP: a web-based geolocated and temporal visualization of the evolution of bioinformatics publications" in Oxfo…☆20Updated 6 years ago
- R We There Yet?☆32Updated 10 months ago