Visualization of Viral Genetic Reassortment
☆21Aug 29, 2026Updated 2 months ago
Alternatives and similar repositories for seqcombo
Users that are interested in seqcombo are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A Companion Package for the Book "Data Integration, Manipulation and Visualization of Phylogenetic Trees"☆13Sep 15, 2022Updated 4 years ago
- ☆13Dec 19, 2018Updated 7 years ago
- Homepage for YuLab-SMU☆14Oct 15, 2026Updated 2 weeks ago
- Posterior Analysis of Coalescent Trees☆14Aug 6, 2015Updated 11 years ago
- Exploring COVID-19 data☆18Mar 1, 2023Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- download files in R using wget -c☆16Aug 20, 2025Updated last year
- Detecting recombination of viral lineages☆11Dec 23, 2025Updated 10 months ago
- Grammar of Graphics on ‘base’ Graphics☆52Oct 18, 2026Updated last week
- Interface to Popular Multiple Sequence Alignment Tools - R-package☆12Sep 6, 2024Updated 2 years ago
- Primalscheme3. Generation of highly multiplex primerschemes☆28Oct 20, 2026Updated last week
- Virus reassortment inference software. Infers both recent and ancestral reassortment and uses flexible molecular clock constraints.☆23Sep 29, 2025Updated last year
- Using ggtree to Visualize Data on Tree-Like Structure☆25Mar 6, 2020Updated 6 years ago
- Data and scripts for Zika virus tutorial☆10Jul 21, 2026Updated 3 months ago
- The Zika bioinformatics pipeline☆37Mar 29, 2020Updated 6 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- dplyr verbs for clusterProfiler outputs☆13Mar 12, 2020Updated 6 years ago
- MeSH Enrichment and Semantic analyses☆13Sep 28, 2026Updated last month
- This is a read-only mirror of the CRAN R package repository. PopGenome — An Efficient Swiss Army Knife for Population Genomic Analyses …☆16Feb 3, 2020Updated 6 years ago
- Meta package for processing and visualizing tree with data☆29Nov 1, 2021Updated 4 years ago
- Spatially Variable Profiler☆12Aug 18, 2026Updated 2 months ago
- R/Package Version Check☆23Oct 22, 2021Updated 5 years ago
- Base Classes and Functions for Phylogenetic Tree Input and Output☆103Sep 21, 2026Updated last month
- Population genetics analyses☆23Oct 10, 2019Updated 7 years ago
- Observed substitution counts of SARS-CoV-2 compared to those expected under the mutation rates☆22Aug 6, 2026Updated 2 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- VIGOR4☆24Aug 15, 2025Updated last year
- A collection of documented examples using TreeTime☆22Jul 30, 2019Updated 7 years ago
- A Tidy Tool for Phylogenetic Tree Data Manipulation☆61Jul 2, 2026Updated 3 months ago
- BEAST2 implementation of the Masco approximation of the structured coalescent with forwards/backwards algorithm for node state calculatio…☆12Oct 13, 2026Updated 2 weeks ago
- Inference of putative transmission phylogenetic clusters☆13Oct 13, 2020Updated 6 years ago
- Racmacs R package for performing antigenic cartography☆24Jul 8, 2026Updated 3 months ago
- R package to generate the same BEAST2 XML parameter files as generated by BEAUti 2☆15Dec 8, 2025Updated 10 months ago
- Inferring spatiotemporal dynamics of the H1N1 influenza pandemic from sequence data☆34Oct 25, 2013Updated 13 years ago
- Olivar: towards automated variant aware primer design for multiplex tiled amplicon sequencing of pathogens☆42Apr 6, 2026Updated 6 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Assembly and intrahost / low-frequency variant calling for viral samples☆15Feb 12, 2020Updated 6 years ago
- Read Assignment, Mapping, and Phylogenetic Analysis in Real Time☆87Mar 2, 2026Updated 7 months ago
- Assign genotypes to Salmonella Typhi genomes based on VCF files (mapped to Typhi CT18 reference genome)☆31Jul 18, 2025Updated last year
- ☆36Jan 1, 2019Updated 7 years ago
- Calculate genome wide average nucleotide identity (gwANI) for a multiFASTA alignment☆16Dec 5, 2018Updated 7 years ago
- ☆17Dec 15, 2017Updated 8 years ago
- rapid serotyping of Vibrio parahaemolyticus from whole genome sequencing data using serogroup-specific genes☆10Sep 2, 2021Updated 5 years ago