YuLab-SMU / seqcomboLinks
Visualization tool for genetic reassortment
☆21Updated last month
Alternatives and similar repositories for seqcombo
Users that are interested in seqcombo are comparing it to the libraries listed below
Sorting:
- ggtree version of plotTree.R☆18Updated 7 years ago
- R interface to the JBrowse 2 Linear Genome View.☆39Updated last year
- Schloss Lab Tools for Reproducible Microbiome Research 💩☆31Updated 2 years ago
- A shiny package for microbiome functional enrichment analysis☆38Updated this week
- Ying's tools for analysis, with particular focus on microbiome data☆41Updated last month
- ☆26Updated 4 years ago
- Handy tools for Microbiome analysis in R☆18Updated 6 years ago
- A comprehensive and customizable R package for microbiome analysis.☆23Updated 4 months ago
- Microbiome research☆21Updated 3 years ago
- An integrated analysis toolkit and pipeline for Next-Generation Sequencing (NGS) panel sequencing data☆14Updated 7 years ago
- R shiny app for interactive microbiome analysis☆56Updated 6 months ago
- Talk to the NCBI EUtils☆22Updated 5 years ago
- A Linear Discriminant Analysis Effect Size (LEfSe) wrapper.☆26Updated 8 years ago
- A microbial profiling framework for metagenomic analysis☆24Updated 5 years ago
- A command line tool to compute mapping statistics from a BAM file☆25Updated 3 years ago
- R package for microbiome analysis. Provides helper functions for common workflows ranging from preprocessing to visualization.☆24Updated last year
- An R package for analysis of microbiome relative abundance data using zero inflated beta GAMLSS and meta-analysis across microbiome studi…☆34Updated 5 years ago
- UNDER DEVELOPMENT--- Analysis of long non-coding RNAs from RNA-seq datasets☆34Updated 8 months ago
- Guangchuang Yu's CV☆43Updated last month
- A standalone interactive application for detecting biological significance on a set of genes☆40Updated 4 years ago
- Genome wide orthology inference and dNdS estimation☆96Updated 3 months ago
- A tool to infer TF regulators for gene modules.☆10Updated 4 years ago
- Analysis of RNAseq data from (host-associated) microbial mixtures☆12Updated 6 years ago
- A set of R scripts for the analysis of microbial profiles☆41Updated last year
- Evolutionary Transcriptomics with R☆48Updated last month
- KOBAS: a command line tool for identifying significant pathways from genomic data☆32Updated 15 years ago
- ☆23Updated last week
- A Shiny-based server framework for retrieving, analyzing and visualizing the large genomic variations data in a lab.☆19Updated last year
- Microbiome Analysis Using R Workshop originally organized for the 2018 ASM General Meeting in Atlanta, GA, but regularly updated since.☆27Updated 3 years ago
- Code for the paper "BIOLITMAP: a web-based geolocated and temporal visualization of the evolution of bioinformatics publications" in Oxfo…☆20Updated 6 years ago