flu-crew / TreeSortLinks
Virus reassortment inference software. Infers both recent and ancestral reassortment and uses flexible molecular clock constraints.
☆16Updated last month
Alternatives and similar repositories for TreeSort
Users that are interested in TreeSort are comparing it to the libraries listed below
Sorting:
- Collection of R scripts for SARS-CoV-2 (variant) analyses☆12Updated 2 years ago
- Phylogenetic maximum representation sampling: choosing most representative strains or taxa☆39Updated 5 months ago
- a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome☆49Updated 3 years ago
- Extract metadata from biosamples in NCBI☆16Updated 4 years ago
- BEAV: Bacterial Element Annotation reVamped☆68Updated last month
- MIRA: Portable, Interactive Application for High-Quality Influenza, SARS-CoV-2 and RSV Genome Assembly, Annotation, and Curation☆19Updated last month
- Discover and annotate the virome☆49Updated 3 weeks ago
- MAG Circularization Method☆32Updated 3 years ago
- Influenza data pipeline to automate genotyping assignment☆37Updated 3 months ago
- An `R` package for various phylogenetic and evolutionary biology data manipulations☆12Updated 7 years ago
- Bacterial GWAS analysis☆43Updated 2 months ago
- lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters☆37Updated 5 months ago
- A fast approximation to a Dirichlet Process Mixture model (DPM) for clustering genetic data☆66Updated 3 years ago
- ☆10Updated 4 months ago
- CroCoDeEL is a tool that detects cross-sample contamination in shotgun metagenomic data☆24Updated last month
- ☆27Updated 7 months ago
- Unified Human Gut Virome Catalog☆36Updated 2 weeks ago
- MutTui pipeline to reconstruct mutational spectra for bacterial and viral datasets☆29Updated last year
- A pipeline for the macro- and micro-diversity analyses and visualization of metagenomic-derived populations☆42Updated 2 years ago
- Read mapping pipeline for detection and measurement of virus pathogens from metagenomic or clinical data☆39Updated last week
- 🍊 💫 Trim, circularise and orient long read bacterial genome assemblies☆25Updated 6 years ago
- ☆17Updated last year
- Pipeline for metagenomic community analysis using DNA isolated from virus-like particles☆13Updated 5 years ago
- A containerized bioinformatics pipeline for viral metagenomic data analysis☆36Updated last year
- SpydrPick: mutual information based detection of pairs of genomic loci co-evolving under a shared selective pressure.☆13Updated 3 years ago
- Course materials for the Genomics Aotearoa Metagenomics Summer School, to be hosted at the University of Auckland in Septermber☆64Updated last year
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆25Updated last year
- RCandy: an R package for visualising homologous recombination events in bacterial genomes☆25Updated 3 years ago
- PLSDB pipeline to collect bacterial plasmids from NCBI☆38Updated 11 months ago
- High-resolution strain-level microbiome composition analysis tool based on reference genomes and k-mers☆42Updated last year