Alternatives and similar repositories for TreeSort

Users that are interested in TreeSort are comparing it to the libraries listed below

• jonas-fuchs / SARS-CoV-2-analyses
  Collection of R scripts for SARS-CoV-2 (variant) analyses
  ☆12Updated 2 years ago
• stajichlab / biosample_metadata
  Extract metadata from biosamples in NCBI
  ☆16Updated 4 years ago
• fmenardo / Treemmer
  Python tool to reduce size and redundancy of phylogenetic datasets
  ☆48Updated last week
• flu-crew / parnas
  Phylogenetic maximum representation sampling: choosing most representative strains or taxa
  ☆40Updated 2 months ago
• flass / pantagruel
  a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome
  ☆50Updated 3 years ago
• USDA-VS / GenoFLU
  Influenza data pipeline to automate genotyping assignment
  ☆37Updated last month
• CDCgov / MIRA
  MIRA: Portable, Interactive Application for High-Quality Influenza, SARS-CoV-2 and RSV Genome Assembly, Annotation, and Curation
  ☆22Updated 2 months ago
• Kalan-Lab / zol
  zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)
  ☆70Updated 2 weeks ago
• CCB-SB / plsdb
  PLSDB pipeline to collect bacterial plasmids from NCBI
  ☆39Updated last year
• vinuesa / get_phylomarkers
  A pipeline to select optimal markers for microbial phylogenomics and species tree estimation using the multispecies coalescent and concat…
  ☆59Updated last week
• mtisza1 / Cenote-Taker3
  Discover and annotate the virome
  ☆54Updated last month
• snayfach / UHGV
  Unified Human Gut Virome Catalog
  ☆38Updated last month
• functional-dark-side / agnostos-wf
  ☆45Updated 2 years ago
• deprekate / PHACTS
  A simple program to classify the lifestyle of phages.
  ☆17Updated 2 years ago
• adamhockenberry / bacphlip
  A python library for predicting phage lifestyle based on genome sequence
  ☆37Updated 2 years ago
• metaGmetapop / metapop
  A pipeline for the macro- and micro-diversity analyses and visualization of metagenomic-derived populations
  ☆43Updated 2 years ago
• metagenopolis / CroCoDeEL
  CroCoDeEL is a tool that detects cross-sample contamination in shotgun metagenomic data
  ☆24Updated 4 months ago
• zreitz / multismash
  A workflow and scripts for large-scale antiSMASH analyses
  ☆46Updated 8 months ago
• arumugamlab / msamtools
  Metagenomics-related extended functionalities to samtools
  ☆22Updated 2 years ago
• endixk / ezaai
  EzAAI - High Throughput Prokaryotic AAI Calculator
  ☆44Updated 4 months ago
• ohlab / GRiD
  Growth Rate Index (GRiD) measures bacterial growth rate from reference genomes (including draft quality genomes) and metagenomic bins at …
  ☆31Updated 5 years ago
• wclose / viralMetagenomicsPipeline
  Pipeline for metagenomic community analysis using DNA isolated from virus-like particles
  ☆13Updated 5 years ago
• weisberglab / beav
  BEAV: Bacterial Element Annotation reVamped
  ☆72Updated 3 months ago
• cjneely10 / MetaSanity
  Pipeline for major biological analyses.
  ☆35Updated 3 years ago
• EBI-Metagenomics / kegg-pathways-completeness-tool
  ☆28Updated this week
• Kalan-Lab / lsaBGC
  lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters
  ☆39Updated 2 months ago
• lmlui / Jorg
  MAG Circularization Method
  ☆32Updated last month
• agmcfarland / GeneGrouper
  CLI tool for finding gene clusters in many genomes and placing them in discrete groups based on gene content similarity.
  ☆19Updated last year
• nselem / corason
  Bioinformatic Tools for study Evolution of metabolic diversity
  ☆37Updated last year
• steineggerlab / conterminator
  Detection of incorrectly labeled sequences across kingdoms
  ☆86Updated 3 years ago