chanzuckerberg / czid-dagLinks
Please see https://github.com/chanzuckerberg/czid-workflows for the latest version of CZ ID workflows.
☆27Updated 4 years ago
Alternatives and similar repositories for czid-dag
Users that are interested in czid-dag are comparing it to the libraries listed below
Sorting:
- Reference-free variant discovery in large eukaryotic genomes☆41Updated 4 years ago
- full taxonomer cython repository☆22Updated 6 years ago
- Metagenomic profiling and phylogenetic distances via common kmers☆42Updated 4 years ago
- Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.☆46Updated 7 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆36Updated 6 years ago
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Updated last year
- ☆18Updated 8 years ago
- Homebrew formulae for bioinformatics software only available for Linux☆27Updated 6 years ago
- Stupid Simple Structural Variant View☆25Updated 9 years ago
- reference free variant assembly☆34Updated 2 years ago
- An ultra fast and accurate paired-end adapter trimmer that needs no a priori adapter sequences.☆22Updated 5 years ago
- Error correction for Oxford Nanopore data☆47Updated 4 years ago
- program for haplotype phasing from sequence reads and related tools☆25Updated 7 years ago
- Qtip: a tandem simulation approach for accurately predicting read alignment mapping qualities☆25Updated 6 years ago
- Collection of utilities for working with PacBio-based assemblies☆13Updated 2 years ago
- 🍶 Genome assembly with short sequence reads☆25Updated 2 years ago
- Simplify snpEff annotations for interesting cases☆22Updated 6 years ago
- Bioinformatics pipeline for nanopore sequencing data☆11Updated 7 years ago
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 7 years ago
- RNAsik - more than just a pipeline☆13Updated last year
- Wrapper for RTG's vcfeval; DEPRECATED!☆21Updated 9 years ago
- A method of assessing sequence complexity based on kmer frequencies☆33Updated 7 years ago
- Extract lineage CSVs from NCBI for use with sourmash lca.☆29Updated 2 years ago
- A Framework to call Structural Variants from NGS based datasets☆22Updated 7 years ago
- Workflows I find helpful for fungal genome annotation☆21Updated 2 years ago
- create a gemini-compatible database from a VCF☆55Updated 5 years ago
- robust matching of small variant datasets using flexible scoring schemes☆11Updated 5 years ago
- blast, shmlast☆21Updated 5 years ago
- Nanopore desc☆18Updated 9 years ago
- Genome-wide reconstruction of complex structural variants☆39Updated 3 years ago