R package for studying phylogenetically-informed movements (Dellicour et al. 2016, Bioinformatics; Dellicour et al. 2026, Bioinformatics)
☆43Mar 24, 2026Updated last month
Alternatives and similar repositories for seraphim
Users that are interested in seraphim are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Virus reassortment inference software. Infers both recent and ancestral reassortment and uses flexible molecular clock constraints.☆23Sep 29, 2025Updated 7 months ago
- BEAST 2 package which provides support for multi-type trees: phylogenetic trees on structured populations.☆22Aug 11, 2025Updated 8 months ago
- ☆10Dec 20, 2022Updated 3 years ago
- Inferring spatiotemporal dynamics of the H1N1 influenza pandemic from sequence data☆33Oct 25, 2013Updated 12 years ago
- Main development repository for SpreadGL☆21Sep 30, 2024Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Analysis of global migration patterns of seasonal influenza viruses☆22Jul 24, 2019Updated 6 years ago
- Repository containing a method for automatically identifying pathogen lineages from a phylogeny.☆17May 19, 2023Updated 2 years ago
- Scalable relaxed clock phylogenetic dating☆28Sep 3, 2025Updated 8 months ago
- Inference of putative transmission phylogenetic clusters☆12Oct 13, 2020Updated 5 years ago
- Bayesian Evolutionary Analysis Sampling Trees☆241Updated this week
- Simple Manipulation Of Trees☆13Aug 16, 2025Updated 8 months ago
- Explore spaces of phylogenetic trees☆29Aug 28, 2025Updated 8 months ago
- Spatial Phylogenetic Reconstruction of Evolutionary Dynamics 3☆18Apr 28, 2023Updated 3 years ago
- A forward-time simulator for gene sequences modeling a variety of mutation and selection processes.☆20Aug 23, 2023Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- R package to access the genomics and epidemiology data and Research Library metadata compiled and standardized on outbreak.info.☆21Mar 5, 2023Updated 3 years ago
- R package for microbial pangenomics☆24Apr 12, 2022Updated 4 years ago
- A multi-algorithmic framework for phylogenetic inference☆14Nov 28, 2025Updated 5 months ago
- Quality control for phylogenetic analyses☆13Apr 27, 2026Updated last week
- R tools for posterior analyses using BEAST☆20Apr 10, 2019Updated 7 years ago
- Global phylogenies of SARS-CoV-2 sequences☆85Oct 24, 2023Updated 2 years ago
- Maximum likelihood inference of time stamped phylogenies and ancestral reconstruction☆251Updated this week
- ☆12Feb 9, 2025Updated last year
- PhyDyn: Epidemiological modelling in BEAST☆21Dec 22, 2022Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Exploring the "dusk matter" of the RNA virosphere☆37Mar 25, 2022Updated 4 years ago
- Inferring spatiotemporal dynamics of H5N1 influenza from sequence data☆10Sep 6, 2013Updated 12 years ago
- Code for de novo discovery of viral families in virome data☆16Jun 20, 2024Updated last year
- Phylogenetic maximum representation sampling: choosing most representative strains or taxa☆41Mar 31, 2026Updated last month
- A set of scripts for the assembly of chloroplast genomes out of whole-genome sequencing reads☆12May 2, 2019Updated 7 years ago
- A package containing several useful R-functions for reading and plotting the results of Birth-Death Skyline (BDSKY) runs in BEAST2.☆12Nov 28, 2018Updated 7 years ago
- Fast, scalable, accurate and accessible Bayesian phylogenetics☆44Updated this week
- Posterior Analysis of Coalescent Trees☆14Aug 6, 2015Updated 10 years ago
- Pipelines to do MinION sequencing of Zika virus☆15Jul 25, 2019Updated 6 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Reconstruction of transmission trees using genomic data☆72Sep 27, 2023Updated 2 years ago
- A protein language model for learning the SARS-CoV-2 fitness landscape☆13Apr 22, 2025Updated last year
- Prediction fitness of leaves on a genealogical tree☆12May 7, 2015Updated 10 years ago
- The ARTIC fieldbioinformatics pipeline☆132Apr 28, 2026Updated last week
- R package to generate the same BEAST2 XML parameter files as generated by BEAUti 2☆13Dec 8, 2025Updated 4 months ago
- Integrating influenza antigenic dynamics with molecular evolution☆12May 28, 2015Updated 10 years ago
- The Zika bioinformatics pipeline☆37Mar 29, 2020Updated 6 years ago