peterjc / pico_galaxyView external linksLinks
Galaxy tools and wrappers for sequence analysis
☆17Jun 11, 2024Updated last year
Alternatives and similar repositories for pico_galaxy
Users that are interested in pico_galaxy are comparing it to the libraries listed below
Sorting:
- Bitpacked sequence trait and implementation☆16Jan 20, 2026Updated 3 weeks ago
- Nanopore read de-multiplexer☆13Mar 25, 2020Updated 5 years ago
- Integrating influenza antigenic dynamics with molecular evolution☆12May 28, 2015Updated 10 years ago
- QuasiModo: Assessing viral genomic analysis methods on HCMV strain mixture☆12Sep 22, 2022Updated 3 years ago
- A tool to detect acquired AMR genes directly from long read sequencing data.☆20Jan 31, 2026Updated 2 weeks ago
- VESPA: Very large-scale Evolutionary and Selective Pressure Analyses☆15Mar 18, 2022Updated 3 years ago
- Contains a set of Galaxy Tools mostly written by the Galaxy Team.☆36Nov 24, 2025Updated 2 months ago
- Common repository for scripts to generate trees from taxonomies. Currently includes ITIS, NCBI, and GBIF.☆16Nov 30, 2015Updated 10 years ago
- ☆16Feb 5, 2026Updated last week
- ☆13Jan 20, 2016Updated 10 years ago
- Build single sample pair-based (rule-based) classifiers using top-score pairs or random forest for multi-class problems.☆13May 1, 2023Updated 2 years ago
- ggplot2 geom for QR codes☆16Jul 27, 2021Updated 4 years ago
- Fast sequence distance estimates☆26Jan 29, 2026Updated 2 weeks ago
- A database for signatures of public genomic sources☆18Jan 1, 2026Updated last month
- A graph-inspired data structure for determining likely chains of sequences from breadcrumbs of evidence☆17Jun 29, 2021Updated 4 years ago
- ☆19Feb 15, 2025Updated 11 months ago
- Virus discovery☆17Updated this week
- MetagenOmic read Re-Assigner and abundance quantifier☆20Jan 31, 2025Updated last year
- ggtree version of plotTree.R☆18Nov 12, 2018Updated 7 years ago
- StrainEst - abundance estimation of strains☆20Jan 17, 2020Updated 6 years ago
- ☆16Jul 16, 2016Updated 9 years ago
- Inferring spatiotemporal dynamics of the H1N1 influenza pandemic from sequence data☆33Oct 25, 2013Updated 12 years ago
- Reference-free variant discovery in large eukaryotic genomes☆42Jul 13, 2021Updated 4 years ago
- fastx-utils using klib☆20Sep 1, 2020Updated 5 years ago
- Generate kmers/minimizers/hashes/MinHash signatures, including with multiple kmer sizes.☆24Jan 9, 2021Updated 5 years ago
- Parallel implementation of OrthoMCL☆21Aug 26, 2022Updated 3 years ago
- blast, shmlast☆21Oct 5, 2020Updated 5 years ago
- R/Package Version Check☆22Oct 22, 2021Updated 4 years ago
- Repository containing all code for secondary analysis in the manuscript "On the design of CRISPR-based single cell molecular screens", Hi…☆26Jan 25, 2022Updated 4 years ago
- sunburst plots for taxonomy - working to update Krona☆44Sep 22, 2025Updated 4 months ago
- Phylogenetic analysis of multi-species genome sequence alignments to identify conserved protein-coding regions☆71Oct 16, 2023Updated 2 years ago
- Alignment editor for Mac OS X☆29Aug 1, 2017Updated 8 years ago
- Pairwise nucleotide alignment benchmark of Rust bindings☆31Jul 27, 2023Updated 2 years ago
- Tools for next-generation sequencing analysis☆89Jun 25, 2019Updated 6 years ago
- Extract lineage CSVs from NCBI for use with sourmash lca.☆29Oct 4, 2023Updated 2 years ago
- R We There Yet?☆32Mar 27, 2025Updated 10 months ago
- viGEN - A bioinformatics pipeline for the exploration of viral RNA in human NGS data☆28Oct 8, 2024Updated last year
- Toolkit for preparing genomes for submission to NCBI☆29Sep 6, 2021Updated 4 years ago
- A novel method for sequence similarity estimation☆28Mar 23, 2024Updated last year