blab / global-migration
Analysis of global migration patterns of seasonal influenza viruses
☆22Updated 5 years ago
Alternatives and similar repositories for global-migration:
Users that are interested in global-migration are comparing it to the libraries listed below
- Spatial Phylogenetic Reconstruction of Evolutionary Dynamics 3☆15Updated last year
- ☆17Updated 2 weeks ago
- Reconstruction of transmission trees using genomic data☆62Updated last year
- Spatial Phylogenetic Reconstruction of Evolutionary Dynamics☆20Updated 6 years ago
- Scalable relaxed clock phylogenetic dating☆24Updated last year
- Pipelines to do MinION sequencing of Zika virus☆15Updated 5 years ago
- R package to run BEAST2☆11Updated last week
- R We There Yet?☆30Updated 3 weeks ago
- PhyDyn: Epidemiological modelling in BEAST☆22Updated 2 years ago
- Inferring spatiotemporal dynamics of H5N1 influenza from sequence data☆10Updated 11 years ago
- A versatile simulation engine for stochastic population dynamics models.☆22Updated 2 years ago
- Cluster Investigation & Virus Epidemiology Tool☆50Updated 2 years ago
- Coalescent simulation and likelihood for phylodynamic inference☆14Updated 2 months ago
- baltic - adaptable lightweight tree import code for molecular phylogeny manipulation, analysis and visualisation. This fork will no longe…☆12Updated 5 years ago
- ☆11Updated 2 months ago
- R package for studying environmental rasters and phylogenetic informed movements (Dellicour et al. 2016, Bioinformatics; Dellicour et al.…☆33Updated 2 weeks ago
- BEAST 2 package which provides support for multi-type trees: phylogenetic trees on structured populations.☆21Updated last month
- Pathogen evolution, selection and immunity☆45Updated last year
- Estimating time trees from very large phylogenies☆26Updated 9 months ago
- ☆16Updated 3 years ago
- Utilities and distributions for (birth-death) skyline models.☆10Updated 5 years ago
- Phylodynamic inference☆18Updated 4 years ago
- Molecular Epidemiology of Viruses in R☆19Updated 9 years ago
- An R-wrapper for lsd2☆9Updated last year
- initial commit☆26Updated 2 years ago
- R package to generate the same BEAST2 XML parameter files as generated by BEAUti 2☆13Updated 3 weeks ago
- R package to access the genomics and epidemiology data and Research Library metadata compiled and standardized on outbreak.info.☆20Updated 2 years ago
- R code for writing Beast2 XML (especially morphology/tip-dating)☆11Updated 10 months ago
- Phylogenetics between and within hosts at once, all along the genome.☆48Updated 6 months ago
- A repo with supplementary material for a manuscript on the origin of SARS-CoV-2 origins☆11Updated 4 years ago