roblanf / sarscov2phyloLinks
Global phylogenies of SARS-CoV-2 sequences
☆86Updated last year
Alternatives and similar repositories for sarscov2phylo
Users that are interested in sarscov2phylo are comparing it to the libraries listed below
Sorting:
- Reconstruction of transmission trees using genomic data☆63Updated last year
- Programmatically interact with the GISAID database.☆75Updated 3 months ago
- Phylogenetics between and within hosts at once, all along the genome.☆49Updated 9 months ago
- Cluster Investigation & Virus Epidemiology Tool☆50Updated last month
- ☆49Updated 3 years ago
- Bioinformatics Pipeline and Visualization resources☆56Updated 10 months ago
- Small collection of tools for performing quality control on coronavirus sequencing data and genomes☆48Updated last year
- ☆67Updated 9 years ago
- Parse NCBI taxonomy and accessions to find taxonomic assignments☆77Updated 4 months ago
- ☆71Updated 4 years ago
- A public repository for collective curation of antimicrobial resistance (AMR) genes and mutations. Submit, discuss, and resolve AMR curat…☆59Updated 7 months ago
- SHallow shOtGUN profiler☆54Updated 3 years ago
- Course materials for the Genomics Aotearoa Metagenomics Summer School, to be hosted at the University of Auckland in Septermber☆61Updated 10 months ago
- Bayesian inference of ancestral dates on bacterial phylogenetic trees☆90Updated last week
- An R package designed for drawing gene arrow maps☆83Updated last week
- de novo virus assembler of Illumina paired reads☆56Updated 4 years ago
- baltic - backronymed adaptable lightweight tree import code for molecular phylogeny manipulation, analysis and visualisation. Development…☆107Updated 2 weeks ago
- Sydney Phylogenetics Workshop☆63Updated last week
- Reference-guided multiple sequence alignment of viral genomes☆70Updated last month
- ARTIC SARS-CoV-2 workflow and reporting☆50Updated 2 months ago
- Rapid analysis and visualization of coronavirus genome variation☆48Updated this week
- Simka and SimkaMin are comparative metagenomics methods dedicated to NGS datasets.☆48Updated 3 years ago
- Antibiotic resistance prediction in minutes☆109Updated 7 months ago
- In this repo you will find demos and tutorials prepared by members of the CBIB. Feel free to use them for non-commercial activities given…☆82Updated 7 years ago
- Efficient phylogenetic clustering of viral sequences☆87Updated last year
- treeWAS: A Phylogenetic Tree-Based Tool for Genome-Wide Association Studies in Microbes☆103Updated 5 months ago
- Process consensus file for COG-UK data☆14Updated 3 years ago
- serious constellations of reoccurring phylogenetically-independent origin☆39Updated last year
- Protein Alignment and Detection Interface☆61Updated last year
- Scrapping tool for GISAID data regarding SARS-CoV-2☆41Updated 2 years ago