Inference of putative transmission phylogenetic clusters
☆12Oct 13, 2020Updated 5 years ago
Alternatives and similar repositories for Phydelity
Users that are interested in Phydelity are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Spatial Phylogenetic Reconstruction of Evolutionary Dynamics 3☆17Apr 28, 2023Updated 2 years ago
- Phylogenetic Clustering by Linear Integer Programming (PhyCLIP)☆19Oct 27, 2020Updated 5 years ago
- Inferring spatiotemporal dynamics of H5N1 influenza from sequence data☆10Sep 6, 2013Updated 12 years ago
- Inferring spatiotemporal dynamics of the H1N1 influenza pandemic from sequence data☆33Oct 25, 2013Updated 12 years ago
- Posterior Analysis of Coalescent Trees☆14Aug 6, 2015Updated 10 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- A Nextflow pipeline for viral genomics (Influenza/RSV) supporting Illumina and Nanopore sequencing of clinical and wastewater samples.☆10Feb 27, 2026Updated last month
- Prediction fitness of leaves on a genealogical tree☆12May 7, 2015Updated 10 years ago
- Welcome to the StrainHub Repo - Files and Data - StrainHub Online:☆17Jun 26, 2022Updated 3 years ago
- A Python package to update the MLST database for the mlst tool.☆19Updated this week
- Espalier is a Python package for working with discordant phylogenetic trees using maximum agreement forests.☆14Jul 19, 2023Updated 2 years ago
- R package to generate the same BEAST2 XML parameter files as generated by BEAUti 2☆13Dec 8, 2025Updated 3 months ago
- Main development repository for SpreadGL☆21Sep 30, 2024Updated last year
- app to collapse Pango lineages for reporting☆13Dec 9, 2025Updated 3 months ago
- Ampseer examines reads in fastq format and identifies which multiplex PCR primer set was used to generate the SARS-CoV-2 sequencing libra…☆15Feb 27, 2024Updated 2 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Plasmid analysis using rearrangement distances☆50Mar 12, 2026Updated 2 weeks ago
- R scripts for performing co-occurrence analyses☆36Jan 7, 2015Updated 11 years ago
- ☆21Mar 19, 2025Updated last year
- Functions for distance matrix objects in R.☆14Mar 9, 2026Updated 2 weeks ago
- Rapid & standardized genome annotation using protein structural information☆43Mar 19, 2026Updated last week
- Sketch phylogenetic trees and networks☆24Feb 5, 2026Updated last month
- 🧬 Viral genome reference alignment☆12Jan 26, 2021Updated 5 years ago
- A versatile simulation engine for stochastic population dynamics models.☆23Nov 11, 2022Updated 3 years ago
- PhyDyn: Epidemiological modelling in BEAST☆21Dec 22, 2022Updated 3 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Fast viral consensus genome reconstruction☆26Feb 5, 2026Updated last month
- REcombination BARcode detector.☆16Apr 2, 2024Updated last year
- WITCH is a multiple sequence alignment method that uses multiple weighted HMMs to align unaligned sequences and find consensuses.☆13Nov 18, 2025Updated 4 months ago
- ☆10Jan 24, 2023Updated 3 years ago
- Alignment-free Phylogenetic Placement using filtered SPAced word Matches☆12Jul 19, 2023Updated 2 years ago
- Scalable relaxed clock phylogenetic dating☆28Sep 3, 2025Updated 6 months ago
- Repo for PrimerSchemes☆17Feb 24, 2026Updated last month
- R package for studying phylogenetically-informed movements (Dellicour et al. 2016, Bioinformatics; Dellicour et al. 2026, Bioinformatics)☆37Mar 2, 2026Updated 3 weeks ago
- ☆21Feb 12, 2026Updated last month
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- FASSO: Functional Annotations using Sequence and Structure Orthology☆10Jan 17, 2023Updated 3 years ago
- Visualization tool for genetic reassortment☆21Nov 1, 2025Updated 4 months ago
- Dissecting the effects of DNA copy number variations on transcriptional programs at single-cell resolution☆13Feb 13, 2026Updated last month
- [source] CELLO - Cancer EvoLution toolbox for LOngitudinal data☆17Aug 24, 2020Updated 5 years ago
- Quality control for phylogenetic analyses☆13Mar 16, 2026Updated last week
- ☆10Sep 27, 2022Updated 3 years ago
- A python tool for rapidly assessing the monophyly of user-defined groups in phylogenetic trees.☆10Apr 25, 2024Updated last year