Inference of putative transmission phylogenetic clusters
☆12Oct 13, 2020Updated 5 years ago
Alternatives and similar repositories for Phydelity
Users that are interested in Phydelity are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Phylogenetic Clustering by Linear Integer Programming (PhyCLIP)☆19Oct 27, 2020Updated 5 years ago
- Spatial Phylogenetic Reconstruction of Evolutionary Dynamics 3☆18Jun 26, 2026Updated last week
- Inferring spatiotemporal dynamics of H5N1 influenza from sequence data☆10Sep 6, 2013Updated 12 years ago
- Inferring spatiotemporal dynamics of the H1N1 influenza pandemic from sequence data☆33Oct 25, 2013Updated 12 years ago
- Posterior Analysis of Coalescent Trees☆14Aug 6, 2015Updated 10 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- A Nextflow pipeline for viral genomics (Influenza/RSV) supporting Illumina and Nanopore sequencing of clinical and wastewater samples.☆10Jun 9, 2026Updated 3 weeks ago
- Prediction fitness of leaves on a genealogical tree☆12May 7, 2015Updated 11 years ago
- Welcome to the StrainHub Repo - Files and Data - StrainHub Online:☆18Jun 26, 2022Updated 4 years ago
- Espalier is a Python package for working with discordant phylogenetic trees using maximum agreement forests.☆14Jun 8, 2026Updated 3 weeks ago
- R package to generate the same BEAST2 XML parameter files as generated by BEAUti 2☆13Dec 8, 2025Updated 6 months ago
- Main development repository for SpreadGL☆22Jun 18, 2026Updated 2 weeks ago
- A Python package to update the MLST database for the mlst tool.☆27May 27, 2026Updated last month
- app to collapse Pango lineages for reporting☆13Dec 9, 2025Updated 6 months ago
- Ampseer examines reads in fastq format and identifies which multiplex PCR primer set was used to generate the SARS-CoV-2 sequencing libra…☆15Feb 27, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Plasmid analysis using rearrangement distances☆56Updated this week
- R scripts for performing co-occurrence analyses☆36Jan 7, 2015Updated 11 years ago
- ☆23Mar 19, 2025Updated last year
- ☆10Dec 20, 2022Updated 3 years ago
- Sketch phylogenetic trees and networks☆26Updated this week
- Functions for distance matrix objects in R.☆15Mar 9, 2026Updated 3 months ago
- Rapid & standardized genome annotation using protein structural information☆69Updated this week
- 🧬 Viral genome reference alignment☆12Jan 26, 2021Updated 5 years ago
- A versatile simulation engine for stochastic population dynamics models.☆23Nov 11, 2022Updated 3 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- PhyDyn: Epidemiological modelling in BEAST☆21Dec 22, 2022Updated 3 years ago
- Fast viral consensus genome reconstruction☆27Jun 19, 2026Updated 2 weeks ago
- REcombination BARcode detector.☆16Apr 2, 2024Updated 2 years ago
- WITCH is a multiple sequence alignment method that uses multiple weighted HMMs to align unaligned sequences and find consensuses.☆13Nov 18, 2025Updated 7 months ago
- ☆11Jan 24, 2023Updated 3 years ago
- Scalable relaxed clock phylogenetic dating☆28Updated this week
- Repo for PrimerSchemes☆17Updated this week
- R package for studying phylogenetically-informed movements (Dellicour et al. 2016, Bioinformatics; Dellicour et al. 2026, Bioinformatics)☆43Mar 24, 2026Updated 3 months ago
- ☆22Feb 12, 2026Updated 4 months ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- FASSO: Functional Annotations using Sequence and Structure Orthology☆10Jan 17, 2023Updated 3 years ago
- Visualization tool for genetic reassortment☆21Apr 29, 2026Updated 2 months ago
- [source] CELLO - Cancer EvoLution toolbox for LOngitudinal data☆17Aug 24, 2020Updated 5 years ago
- Quality control for phylogenetic analyses☆13May 25, 2026Updated last month
- ☆10Sep 27, 2022Updated 3 years ago
- Alignment-free Phylogenetic Placement using filtered SPAced word Matches☆13Jul 19, 2023Updated 2 years ago
- A python tool for rapidly assessing the monophyly of user-defined groups in phylogenetic trees.☆12Apr 25, 2024Updated 2 years ago