alvinxhan / Phydelity
Inference of putative transmission phylogenetic clusters
☆11Updated 4 years ago
Alternatives and similar repositories for Phydelity:
Users that are interested in Phydelity are comparing it to the libraries listed below
- Main development repository for SpreadGL☆18Updated 6 months ago
- Strain Resolution ON Graphs☆47Updated last year
- Influenza genome analysis Nextflow workflow☆22Updated last week
- MutTui pipeline to reconstruct mutational spectra for bacterial and viral datasets☆29Updated 9 months ago
- Phylogenetic maximum representation sampling: choosing most representative strains or taxa☆37Updated this week
- ☆17Updated 10 months ago
- CLI tool for finding gene clusters in many genomes and placing them in discrete groups based on gene content similarity.☆17Updated 5 months ago
- Phylogenetic Clustering by Linear Integer Programming (PhyCLIP)☆18Updated 4 years ago
- ☆26Updated last year
- A set of scripts for calculating pairwise SNP distance☆40Updated 2 years ago
- SARs-CoV-2 Primer schemes☆15Updated 2 years ago
- Gene-flank analysis tool☆27Updated 4 months ago
- Assembling the cause of phenotypes and genotypes from NGS data☆29Updated 4 years ago
- An RNA virus strain-level identification tool for short reads.☆21Updated 10 months ago
- create a interactive coverage plot dashboard from bam files and add gb, vcf and bed tracks☆44Updated 8 months ago
- ☆19Updated 10 months ago
- Mandrake 🌿/👨🔬🦆 – Fast visualisation of the population structure of pathogens using Stochastic Cluster Embedding☆36Updated last month
- hAMRoaster is an analysis pipeline that can compare the output of tools for detecting AMR genes and provide metrics of their performance☆22Updated last year
- MAG Circularization Method☆33Updated 2 years ago
- Influenza genome analysis Nextflow workflow☆26Updated last week
- Reference-guided multiple sequence alignment of viral genomes☆66Updated 3 months ago
- Splitting and accelerating the Oxford Nanopore basecaller guppy using CPU with the SLURM job scheduler☆16Updated 9 months ago
- BiG-MEx implementation as Docker images and R packages☆13Updated 3 years ago
- Influenza data pipeline to automate genotyping assignment☆31Updated 2 months ago
- MetaMLST is a computational tool for in-silico Multi-Locus Sequence Typing from metagenomic data.☆15Updated 2 years ago
- NovelTree is a highly parallelized and computationally efficient phylogenomic workflow that infers gene families, gene family trees, spec…☆19Updated 7 months ago
- Snakemake pipeline calculating KEGG orthologue abundance in metagenomic sequence data.☆24Updated 6 months ago
- Fast viral consensus genome reconstruction☆22Updated 4 months ago
- SHOOT.bio - the phylogenetic search engine☆24Updated last year
- Scalable relaxed clock phylogenetic dating☆24Updated last year